Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b02r
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   5.0  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   5.0  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  

>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -3

Query: 594 LDKLAKEKKFIDYFPF---VLDPVE 529
           L KL +E K+ DYFPF   + DP E
Sbjct: 222 LRKLKQEGKYYDYFPFEKTIADPPE 246


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 765 LPETHLSGSP*RII*LTHLLAILEIFQQLFAVSDYFTLYR 884
           L E  +SG     + +THL  IL ++ + FA++  FT+++
Sbjct: 119 LLENKVSGLTKISLKITHLAQILTVWPESFAITPCFTIHQ 158


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 564 IDYFPFVLDPVEETELESRLKSIYLEGEQTSKDVDGFAI 448
           + Y+  +L+    TEL+S +K      E+  K  D F I
Sbjct: 275 VGYYHHLLNNPSNTELQSLIKKYSFYSERLVKSADNFTI 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,092
Number of Sequences: 5004
Number of extensions: 72820
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)