Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15b02f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    41   2e-04
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.29 
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    27   2.1  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.7  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    25   6.3  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   8.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   8.4  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
 Frame = +3

Query: 219 YSFKGIPYAKPPVGELRFAIPQPPE-SWKGVRDATKDCNICAQ--VDKLTGNVVG----- 374
           + F GI YAKPPVG+LR+  P   E  +    D  +   IC Q   +     V       
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKY 78

Query: 375 DEDCLYLNVYTPKLPTSSSELLPVMXXXXXXXXXXXNGTDTAKHGPDFL----IEKDVVI 542
           DEDCL+LN++ P      +E  PV+           N     +  P  L         ++
Sbjct: 79  DEDCLFLNIWVP-AGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFIL 137

Query: 543 VSFNFRIGILGFLA 584
           VS   R+ + GFLA
Sbjct: 138 VSPGHRLNLFGFLA 151


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +3

Query: 213 QYYSFKGIPYAKPPVGELRFAIPQPP--ESWK----GVRDATKDCNICAQ 344
           Q+Y+     YA PP G  R + P PP    +K    G +D+ + C  CA+
Sbjct: 114 QFYARPQSSYAPPPSGRPRISYPYPPGYMCYKCHNTGYKDSGRPCGRCAR 163


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -3

Query: 263 FADRRFR-IRNSFETIILDVLNSCCHISFQFTFINVYNWFRHYKYLQYRLLTQPQH 99
           F  R+ R I N    + L   N    +  Q  +IN  NWF  Y + QY       H
Sbjct: 166 FPIRKHRLIANKNYYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQYSRFLDKVH 221


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 391 TSMFTRPSFPPPALNSYPLCSSFMEVVSFLGTAPTLPNTVQI 516
           +S  +R ++PP  ++    CS F+E    +  A T+ + VQ+
Sbjct: 256 SSYGSRQTYPPSGIDDSSYCSMFVETEFIVEIAQTVFSFVQV 297


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 305 GQRCDQRLQHLRSGRQINRKRSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSWRWFH-FW 481
           G RC++ L +L +   +N  R WR  L   + L A    +      R ++ +++W H F+
Sbjct: 107 GGRCERLLPYLVASNPVNYGRPWR--LNCAEALAACMYIVGYPNEARLLMDNFKWGHSFF 164

Query: 482 E 484
           E
Sbjct: 165 E 165


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 438 RVQSWRWEAWAC 403
           + QSW+W  W C
Sbjct: 59  KFQSWKWRHWGC 70


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 370 LETRIACTSMFTRPSFPPPALNSYPLCSSFMEVVS 474
           L   +A     T+P+F PP+ N Y   S+  +V++
Sbjct: 266 LSPTLAVWLPMTQPTFQPPSANVYQPASNANQVIT 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,954
Number of Sequences: 5004
Number of extensions: 52865
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)