Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15b02f
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122 31 0.70
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 29 2.8
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 29 3.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 29 3.7
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 28 4.9
08_01_0048 + 335868-336682,338382-340386 28 4.9
06_03_1188 + 28269231-28270358 28 6.5
04_03_0467 + 16247207-16247361,16247996-16248192,16248273-16248289 28 6.5
04_01_0360 - 4720997-4721812 28 6.5
04_04_0916 + 29390813-29391893,29402054-29402652 27 8.6
02_01_0447 - 3220489-3220560,3221287-3221420,3221500-3221731,322... 27 8.6
01_04_0139 - 16570515-16571141 27 8.6
>09_02_0583 + 10903232-10903289,10903478-10904021,10906612-10907122
Length = 370
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 383 ILVSNYVSC*FV--DLSANVAIFGRISDPFPRFWWLWYSKP 267
+L +N C F ++ +NV+I DP+ R+WW S P
Sbjct: 178 VLAANQSMCLFDRRNMGSNVSILRYPDDPYDRYWWKMRSDP 218
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +2
Query: 365 RSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSWRWFHFWER 487
R W+ P C H Q + L L RY W W R
Sbjct: 741 RGWQNNSFCPLCRHTQETALHLLAECRYTRKIWAALSDWTR 781
>06_03_1168 -
28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 264 LRFAIPQPPESWKGVRDATKDCNICAQVDKLTGNV 368
L +IPQ P W+ ++D + +C+ +D L G+V
Sbjct: 631 LTCSIPQFPAKWQSIKDKLR--QLCSGLDSLCGSV 663
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 255 VGELRFAIPQPPESWKGVRDATKDCNICAQVDKLTG 362
VG L +P P W GVR + C I + K G
Sbjct: 474 VGRLMLPLPSPKRMWIGVRLISSACGIIFPIIKAEG 509
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 221 IILDVLNSCCHISFQFTFINVYNWFRHYKYLQY 123
I +D +N+ H +F+ ++ WF KYL Y
Sbjct: 185 IYIDFMNNMGHCNFELVPSWLFTWFPPLKYLMY 217
>08_01_0048 + 335868-336682,338382-340386
Length = 939
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 231 GIPYAKPPVGELRFAIPQPPESWKGVRDA 317
G+P A VG L P+ E WK +RD+
Sbjct: 365 GLPLAIVTVGSLLACRPRTMEEWKSIRDS 393
>06_03_1188 + 28269231-28270358
Length = 375
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 279 PQPPESWKGVRDATKDCNICAQVDKLTGNVVGDEDCLYLNVY 404
P PP + V DA ++C +C +D+L VV C +V+
Sbjct: 307 PAPPAKRRKVFDAGEECPVC--LDELEDGVVAWPGCSVAHVF 346
>04_03_0467 + 16247207-16247361,16247996-16248192,16248273-16248289
Length = 122
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 365 RSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSW 463
R W G + P C H Q + + L RY W
Sbjct: 62 RDWPNGSIYPLCRHCQETAIHLLAECRYTRRIW 94
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 302 RGQRCDQRLQHLRSGRQINRKRSWRRG 382
RG+R +RL+ + +++ R+R WR G
Sbjct: 102 RGRRKQRRLETVTRRQRLRRRRQWREG 128
>04_04_0916 + 29390813-29391893,29402054-29402652
Length = 559
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +2
Query: 365 RSWRRGLLVPQCLHAQASHLQL*TLTRYVLHSWRWFHFW 481
R W+ P C H Q + L L RY W W
Sbjct: 429 RGWQNNSFCPLCRHTQETALHLLAECRYTRKIWTALSDW 467
>02_01_0447 -
3220489-3220560,3221287-3221420,3221500-3221731,
3221817-3222015,3222101-3222181,3222260-3222315,
3222493-3222623,3222700-3222847,3224151-3224321,
3224417-3224775,3224898-3225189
Length = 624
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 409 PSFPPPALNSYPLCSSFM 462
PS PPA S PLCS+F+
Sbjct: 33 PSTDPPAPRSRPLCSAFL 50
>01_04_0139 - 16570515-16571141
Length = 208
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 302 RGQRCDQRLQHLRSGRQINRKRSWRRG 382
RG R +RL+ + +++ R+R WR G
Sbjct: 17 RGMRKQRRLETVTRRQRLRRRRQWREG 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,520,001
Number of Sequences: 37544
Number of extensions: 349600
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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