Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a21r
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    51   1e-08
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            25   0.67 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 35/243 (14%)
 Frame = -2

Query: 816 NRIIGGWLATEGQFPYKVSVRNVSPVGGVSACGGSIIHNEWILTAAHCVARRES--FVIR 643
           +RI+GG      +FP    ++     G +  CG +II   ++LTAAHC+    +    I 
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 642 LG----LTNLTRPELIMETVEK-YVHPDYN-VGSTAVQVDEIALLKLPRRVEYGRGYVPE 481
           +G     +       ++ ++ K  +HP Y+ +     Q+++IALLK  + +++G    P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 480 VLSWVYQLGI---TNEECLNWYPN------SQTIKDQTL-------CAKYYNHTSQN--- 358
            L + + L     ++   L W         S  ++  TL       C KYY +   N   
Sbjct: 277 CLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIMVNAMC 336

Query: 357 -------ICTGDSGGPLTMDDLDGSPTI-VGITNFGYARGCNTPNPSGFVRPEFYHDWLK 202
                   C  DSGGP+   +      + +GI ++G   G     P+G  +   Y DW+ 
Sbjct: 337 AYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG---KYPNGNTKVGSYIDWIV 393

Query: 201 QVT 193
             T
Sbjct: 394 SQT 396


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 548 RLMRSLS*SCPVVWSMDAAMSPRS*VGSINW 456
           R  ++L+ +  ++W++D ++ P+   GSI W
Sbjct: 10  RRKKNLNQNQMMIWALDCSIKPKDHNGSIYW 40


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 373 SYFTKHLYRRQWRTPDYG*SRWLTHYRRHH 284
           S+  K L RR  R  +YG    L ++  HH
Sbjct: 254 SWHQKELVRRDSRRKNYGGVYHLDNHHVHH 283


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 517 PSCGVWTRLCPRGLELGLSIGY 452
           P  GVW R  P G     S  Y
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFDY 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,213
Number of Sequences: 438
Number of extensions: 5553
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)