Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a20r
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    29   1.2  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   4.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   4.9  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   6.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   6.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   8.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   8.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   8.6  

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 91  VCYFWIHRTTKSYEF*CRSYFIVNIVFSRKSFNHMVIEFSIS 216
           +C+F ++RTT S+       F+ N  F+R  F  +   FS S
Sbjct: 59  LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSSS 100


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 774 PEALKLVEKLDYKMDTKTNEVIGKTAVVLDGSSCSKTE 661
           PE +K    +D+K D++ N V   TAV  DGS    TE
Sbjct: 213 PEFIKKPSMVDHKRDSEINAV---TAVSADGSFSPLTE 247


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 802 NWICCIFNKFTVRIKFNMKLPKVFTVSRRLYYRDT 906
           +WICC       + +FN  LP  FT+    Y  +T
Sbjct: 7   SWICCAKYFVNTKSRFNEILPPRFTLIVSFYSMNT 41


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -3

Query: 870 YLGKLHVKFDPNGEFIEYTADP------ILLDSTQSEDPEALK 760
           +L  L  +    G F+ YTA+       ++ D T SE+PEALK
Sbjct: 670 HLPDLVNRLSTTGHFLAYTANLERDGVFVIADHTLSENPEALK 712


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 216 LKLRALIFYSFSNHRCCKILVRNKYH 293
           +K R    ++FS  R C +  RNKYH
Sbjct: 1   MKFRLNANFNFSFRRYCFVQCRNKYH 26


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 255 HRCCKILVRNKYHISQQRSLP*ILVLELYCTLHEFQKIAEIFQTGFL-HCNQLQNVLRFL 431
           HRC     + K H+    +    L +   CT +E Q   E  Q GF+  C +L  +L   
Sbjct: 487 HRC-----KYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQNGFIPTCERLCTILLSC 541

Query: 432 LKH 440
            +H
Sbjct: 542 GRH 544


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 825 IEYTADPILLDSTQSEDPEALKLVEKLDYKMDTKTNEVIGKTA 697
           +E T DP+   S + ED    K V    Y   +K+NE    TA
Sbjct: 723 LESTVDPLDAHSIEEEDDSEFKDVAPGSYPEPSKSNENTKLTA 765


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 706 KNSCGTRRVELQQNRM*HRKSDYRCHDVLSC 614
           ++    +R+++ QN M    S YRCH +++C
Sbjct: 202 RDQATAKRLDVMQNSM----SVYRCHTIMNC 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,600,233
Number of Sequences: 5004
Number of extensions: 73761
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)