Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a20f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   2.2  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   3.8  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   5.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   5.1  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   6.7  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    25   8.8  

>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 397 TAPEGLRLSELLCEPALPGKRPSRNLRSIFLHSCRLRYTLRSVARSVRTWRACH 236
           TA   + +S LL EPA P     +     FL      Y ++SVA S+  W ACH
Sbjct: 87  TASRRIPVSSLLSEPA-PHGLAGQPTHPTFL------YYIQSVAPSLCLWDACH 133


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 508 NNEINETGKLSPLLQTIQTNITISNVILNLLSKMKT 615
           NNE NE G+ S +  +I+TN+   ++  N+    +T
Sbjct: 481 NNEENEDGEESDIFDSIETNLENLDIENNIALDKRT 516


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 224 ISSSNVPSLFVRATLQPVSVTTANVAISCVKNSIFFCD 111
           +++ +VP LF RATL      T  V+  CV ++  + D
Sbjct: 290 VATCSVPFLFKRATLWERDPLTREVSAFCVTDAPLWMD 327


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 308 PAFLSASVHTPLSCEVCSNLACMSLLCRISSSN 210
           P   SA   TP+ C   SN+    L   ISSSN
Sbjct: 403 PERSSAVKTTPMKCSSLSNIYTSDLFFAISSSN 435


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 510 QRNKRNWKTLTAPSNHPNEHNNQ*CNTKSAEQNE 611
           + +++N   +  PS+HP    NQ  N  ++E+ E
Sbjct: 93  RHDRQNEPVIEEPSSHPKNQKNQENNEPTSEEFE 126


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 332 LAKPP*HFPAFLSASVHTPLSCEVCSNLACMSLLCR 225
           L KP   +  +L+  V  P +C+  S+  C+S+  R
Sbjct: 111 LGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDR 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,903
Number of Sequences: 5004
Number of extensions: 48468
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)