Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15a20f
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0080 - 28208043-28208138,28208187-28208257,28208300-282086... 30 1.3
02_05_0020 + 25070664-25070692,25070934-25071513,25071605-250718... 29 3.0
05_02_0073 + 6336649-6336710,6336846-6336894,6338079-6338468,633... 28 5.2
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 28 5.2
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875... 28 5.2
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930... 28 6.9
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444... 28 6.9
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 28 6.9
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513... 28 6.9
09_06_0280 + 22010270-22011407,22011890-22013097 27 9.1
05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260... 27 9.1
02_01_0237 - 1570395-1571225,1572225-1572245,1572336-1572506,157... 27 9.1
01_01_0949 + 7456938-7457221,7457826-7458030,7458501-7458547,745... 27 9.1
>11_08_0080 -
28208043-28208138,28208187-28208257,28208300-28208603,
28210483-28211544
Length = 510
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 308 PAFLSASVHTPLSCEV-CSNLACMSLLCRISSSNVPSLFVRATLQPVSVTTANVAISCVK 132
PAF+SA +TP+S V N SL + + + +VRA L P V NV +
Sbjct: 65 PAFISAFANTPISLAVSLPNSDLPSLADKQTGLDTARAWVRANLSPY-VPATNVTLLLAG 123
Query: 131 NSI 123
N I
Sbjct: 124 NEI 126
>02_05_0020 +
25070664-25070692,25070934-25071513,25071605-25071817,
25071918-25072207,25072301-25072412,25072539-25072763,
25072853-25073464
Length = 686
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 307 LHSCRLRYTLRSVARSVRTWRAC 239
LHS R+R+ R + RTW AC
Sbjct: 605 LHSARIRHRFRFYSHQWRTWAAC 627
>05_02_0073 +
6336649-6336710,6336846-6336894,6338079-6338468,
6338677-6338902,6338983-6339270,6339594-6339967,
6340044-6340736
Length = 693
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 516 NKRNWKTLTAPSNHPNEHNNQ*CNTKSAEQNENFH 620
NK+N+K P P HN++ CN A+ H
Sbjct: 567 NKKNFKRCGKPKTLPQSHNDK-CNKTKAKSTAQVH 600
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -3
Query: 455 FHLYWANQGEPVYVSPALRYSTG 387
F ++W+ +GEPV VS ALR ++G
Sbjct: 451 FQMHWS-KGEPVIVSDALRLTSG 472
>02_02_0300 -
8746526-8747224,8749033-8749089,8749414-8749650,
8750061-8750172,8750258-8750538,8752032-8752244,
8753105-8753636,8753871-8753899
Length = 719
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 307 LHSCRLRYTLRSVARSVRTWRAC 239
LHS +L++T R ++ RTW AC
Sbjct: 609 LHSKQLQHTFRFYSQQWRTWAAC 631
>09_06_0257 +
21891523-21891578,21891911-21892421,21893021-21893092,
21893571-21893875,21894085-21894196,21894514-21894750,
21894933-21895640
Length = 666
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 307 LHSCRLRYTLRSVARSVRTWRAC 239
LHS +L++T R + RTW AC
Sbjct: 553 LHSKKLQHTFRFYSHHWRTWAAC 575
>06_01_0614 +
4448129-4448157,4448733-4449231,4449512-4449550,
4449590-4449802,4449941-4450227,4450456-4450567,
4451515-4451751,4451857-4451957,4452285-4452384,
4452509-4453141
Length = 749
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 307 LHSCRLRYTLRSVARSVRTWRAC 239
LHS +L++T R + RTW AC
Sbjct: 655 LHSRKLQHTFRYYSHHWRTWAAC 677
>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 487 PDAVSLGNNEINETGKLSPLLQTIQTNITISNVILNLLSKMK 612
PD V +GN + S LQ + N T+ + + +L +K
Sbjct: 1310 PDQVKIGNGHSSSISSTSEYLQALSRNWTVKSFVTSLTRVIK 1351
>02_05_1019 -
33549576-33550247,33550885-33551121,33551206-33551317,
33551998-33552215,33553084-33553194
Length = 449
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 307 LHSCRLRYTLRSVARSVRTWRAC 239
LHS RL++T R + RTW +C
Sbjct: 348 LHSKRLQHTFRYYSHHWRTWASC 370
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 296 SASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFV-RATLQPVSVTTANVAISCV 135
+ SV P +L L C ++SN P L + +TLQ VS++ AN + V
Sbjct: 48 NVSVPFPFGIRTGCSLEGFGLTCN-TTSNPPRLMIGNSTLQVVSISLANSTLRAV 101
>05_04_0160 -
18624952-18625106,18625411-18625535,18625954-18626087,
18626221-18626298,18626456-18626561,18627739-18627836
Length = 231
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 338 ATLAKPP*HFPAFLSASVHTPLSCEVCSNLACMSLL 231
AT PP P SA HTP CE +L C L+
Sbjct: 10 ATPPPPPPPPPLDASAFTHTPYYCEENVHLLCKELI 45
>02_01_0237 -
1570395-1571225,1572225-1572245,1572336-1572506,
1572942-1573070,1574364-1574657
Length = 481
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 108 CITKKNGIFNAADSNVSGGDAHGLQRGAYEQGRYI*ATDPAQQ*HARQVR 257
CI+ NG F ++ G HG+ G+ QG A D AR R
Sbjct: 278 CISISNGSFAVRMRDIDCGPGHGISIGSLGQGGAFAAVDGVSLDGARVAR 327
>01_01_0949 +
7456938-7457221,7457826-7458030,7458501-7458547,
7458643-7458796
Length = 229
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 314 HFPAFLSASVHTPLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSVTTAN 153
H P FL+ ++ + L C+ A S+LC SSS+ S V T + +V A+
Sbjct: 19 HNPVFLTGNLSSSLLCKKHPQAARGSILCSSSSSSNSSASV-VTKEQEAVAAAS 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,072
Number of Sequences: 37544
Number of extensions: 343998
Number of successful extensions: 1172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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