Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a17f
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 91  YTKLCWRLQQPSELQSR*SFRPQQTSATERLRFQPISSHATDV 219
           Y    +R +   EL S     P+     E   F+P+SS ATD+
Sbjct: 242 YNTKFFRYRITPELYSEHLVVPEIEDNLETSLFRPLSSEATDL 284


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 11  KQSQTTPCLKDLIYEFSQQLKIIMQRNTQSFVGGCSSPQNYNQG 142
           +Q      + D +Y F+  L  + +       G C S  NY++G
Sbjct: 325 EQESKVQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMANYDRG 368


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +2

Query: 11  KQSQTTPCLKDLIYEFSQQLKIIMQRNTQSFVGGCSSPQNYNQG 142
           +Q      + D +Y F+  L  + +       G C S  NY++G
Sbjct: 415 EQESKVQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMANYDRG 458


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 336 CRKTGISIVIMIIRLLFKLN 395
           C++ GIS+V  +   L+KL+
Sbjct: 135 CKELGISVVQKVSHTLYKLD 154


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 220 VRLWHVRRWAETGAVLWQRSVEAETTTLIVVLRAA 116
           V+LW+V    +   + W+   + +  T+ V+  AA
Sbjct: 593 VQLWYVPSLDQVWILNWRNQKDIDVKTVQVIEDAA 627


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +2

Query: 188 FSPSPHMPQTYQPH 229
           + P  H P  Y PH
Sbjct: 316 YHPHQHHPSQYHPH 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,211
Number of Sequences: 438
Number of extensions: 2520
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)