Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a16f
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0185 - 1485023-1485733                                           29   3.4  
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174...    29   3.4  
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038     28   4.5  
02_03_0316 - 17641559-17641798,17641874-17641972                       28   6.0  
11_06_0502 + 24369519-24369521,24369957-24370227,24371301-24371614     27   7.9  
11_05_0080 + 18920341-18921009                                         27   7.9  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    27   7.9  

>03_01_0185 - 1485023-1485733
          Length = 236

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 259 LSVNSLRQHHMLLAGFKDLGYSFVAG 336
           LS+NS R HH++L  F D+     AG
Sbjct: 187 LSLNSSRHHHLILRAFADVCEELFAG 212


>02_05_0769 +
           31616644-31616875,31616980-31617203,31617308-31617426,
           31617528-31617684,31617928-31618029,31618111-31618230,
           31618761-31618855,31619900-31619984,31620090-31620180,
           31620534-31620618,31620702-31620806,31621019-31621894,
           31622016-31622124,31622266-31622414,31622518-31622737
          Length = 922

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = -1

Query: 284 CCRREFTLSKHSSSVKQSLDTVCCITTKSIGLFRGCLRRDSVPLHSVMGISPHSDAKVDN 105
           C    F   K +S V+  L   CC  T+ +GL        SV   + + +SP S      
Sbjct: 17  CTGANFGFEKRTSKVRFVLVGRCCSGTRKLGLVCASNSHSSVMEPAQLPLSPESGNTPKK 76

Query: 104 PAHVATMIKNRILFIVNKRSAFT 36
            +  A ++      + N+++ FT
Sbjct: 77  SSESALILIRHGESLWNEKNLFT 99


>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
          Length = 202

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 52  LFTMNSILFLIIVATCAGLSTFASECGEI 138
           LF   ++L ++ V  CAGL+ F  E G+I
Sbjct: 163 LFVPVTVLVIVAVCACAGLAIFCFEEGQI 191


>02_03_0316 - 17641559-17641798,17641874-17641972
          Length = 112

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 558 CLSTAGD-QRRGSLQSISYFNSTG*KVLDRLQCLLGRQLLPKVSNETDPYGYIIV 397
           C    GD  R G+        +T  KVLD   C++G+    + S +   YGY+ +
Sbjct: 15  CPRDGGDLARSGAGSDHDQIRTTATKVLD--DCIIGKVATKQASTQRSGYGYVSI 67


>11_06_0502 + 24369519-24369521,24369957-24370227,24371301-24371614
          Length = 195

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 244 DEECLLSVNSLRQHHMLLAGFKDLGYSFV 330
           DEECLL+ + L          ++LGY+F+
Sbjct: 129 DEECLLNESMLEDQETFRHQIENLGYAFI 157


>11_05_0080 + 18920341-18921009
          Length = 222

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 230 LDTVCCITTKSIGLFRGCLRRDSVPLHSVMGISPHSDAKV 111
           L TV C     +GLF   +  DS PL  V  ++P  + K+
Sbjct: 3   LSTVLCCYLLLLGLFAPEIISDSPPLQDVCPMAPQGERKL 42


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 122 PNAAKFPSPNGVARSHVVNNL*RVLLTWW 208
           P+ A+F +P+   R H++      L  WW
Sbjct: 232 PSPARFTTPSATPRHHIITTKPSSLRIWW 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,868
Number of Sequences: 37544
Number of extensions: 360501
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)