Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a13r
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 474 LDVYGLL*PLNTRWAVSSSNHLSNKKKCRTRIYRTTLKWYCL 349
           +D+ G L  L     +  SNH+   K     I R TLK  CL
Sbjct: 310 MDLKGDLEGLVEGVIIDCSNHIGRGKLVTALIQRGTLKKGCL 351


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 18  FETQVMKCSDVIQRHLTRL 74
           F+TQ  KC+++ +++L +L
Sbjct: 71  FQTQCKKCTEIQKQNLDKL 89


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 488 LTYKFKYSYNLLYVIKICLIRLAWMGRRCIHRASIDILG 604
           +T   KY         I  + L W+G  CI    + I+G
Sbjct: 143 ITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPPLLIMG 181


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 18  FETQVMKCSDVIQRHLTRL 74
           F+TQ  KC+++ +++L +L
Sbjct: 71  FQTQCKKCTEIQKQNLDKL 89


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 620 EASXLLIKYNLSKTTRQLVSYIQH*NNGRMNISSLSNQNL 739
           EA  LLI ++ + T   +   +   NN ++  SS+ N NL
Sbjct: 501 EAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSV-NSNL 539


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 41  FRCYTKAFDSALRRHYADNTP 103
           FRC  +  D AL  HY  + P
Sbjct: 120 FRCTERPEDGALILHYYSDRP 140


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 41  FRCYTKAFDSALRRHYADNTP 103
           FRC  +  D AL  HY  + P
Sbjct: 120 FRCTERPEDGALILHYYSDRP 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,500
Number of Sequences: 438
Number of extensions: 3849
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)