Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a13f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...   109   4e-25
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    29   0.50 
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    28   0.87 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   3.5  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   6.1  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   8.1  

>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score =  109 bits (261), Expect = 4e-25
 Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 7/155 (4%)
 Frame = +2

Query: 137 NINQNLLNIQYAVRGPILQRALQIERELVKGVPKR-FERVVRANCGDCHALGQKPITFIR 313
           ++NQ +    YAVRG +   A +I+ +L++      F  +V AN G+   +GQ PITF+R
Sbjct: 32  SLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITFVR 91

Query: 314 QVLALVSFPELISSRLD------IPQDVKDRAKELLDDCTKGSVGSYSPSNGLNLVRSRV 475
           QVL+L  +P L+    +       P DV  R+K LL +   GS+G+YS S G+ LVR  V
Sbjct: 92  QVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKE--SGSLGAYSASQGIPLVRRHV 149

Query: 476 AQYITNRDGVPSNPDDIYLGSGASDVIKSVLTLFV 580
           A +I  RDG    P DIYL SGAS   + ++TL +
Sbjct: 150 ADFIRARDGFDCEPSDIYLTSGASHAARLIMTLII 184


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 292 ETHHIHKTGISPSVIPGTDLVSS*YPSRREGQSQRATRRLHERFSGIVFSIQRSQLGAIS 471
           +T+  HK+  S ++       SS      + +S  A   LH+  SG   + +RS++G  S
Sbjct: 287 QTNKFHKSKSSTALFKSKKDSSSSLNKMHKSESHSALNNLHKSESGTSLNNRRSKVGPGS 346

Query: 472 C 474
           C
Sbjct: 347 C 347


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 233 PKRFERVVRANCGDCHALGQKPITFIRQVLALVS--FPELISSRLDI-PQDVKDRAKELL 403
           P      + AN  DC A  + PIT +  V    S   P++   +     +  K +A   L
Sbjct: 375 PASVRAELEANAADCKARAESPITNVEAVRERQSKVTPQMHERKSPFETRYAKQQASLKL 434

Query: 404 DDCTKGSVGSYSPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVIK 559
                 ++GS+  +  + + R+R A+ + +++       D ++    SDV+K
Sbjct: 435 PLFPTTTIGSFPQTKEIRVTRNRFAKGLISQEEY-----DAFIRKEISDVVK 481


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 179 GPILQRALQIE-RELVKGVPKRFERVVRANCGDCHALGQKP 298
           G  ++ ++ I+  E V+G  K     V + C  CH  G +P
Sbjct: 210 GEDIEASITIDFMEAVRGAKKDLSYSVSSTCSSCHGSGLQP 250


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 26/110 (23%), Positives = 49/110 (44%)
 Frame = +2

Query: 137 NINQNLLNIQYAVRGPILQRALQIERELVKGVPKRFERVVRANCGDCHALGQKPITFIRQ 316
           ++ + LL   Y VRG +  R+++   EL++  P   +++      D  A           
Sbjct: 18  HVAEQLLQAGYRVRGTV--RSMEKADELIRLNPGLKDKIEFVIVKDVSASNA-----FDG 70

Query: 317 VLALVSFPELISSRLDIPQDVKDRAKELLDDCTKGSVGSYSPSNGLNLVR 466
           VL  V     I+S   + ++V D   +LLD   KG++G    + G+  ++
Sbjct: 71  VLKDVELICHIASPFFV-ENVTDNKSQLLDPAVKGTLGILEAAQGVKSIK 119


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 381 RTEPKSYSTTARKVQWDRILHPTVSTWCDLVSHSTSRTETVCLPTLTIFT 530
           +T  K     A+K     +L  T + W D  + S S + T+    L IFT
Sbjct: 310 KTMQKCTVLNAKKESLSSVLKSTKTKWYDFETFSNSYSSTIIDFPLGIFT 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,304
Number of Sequences: 5004
Number of extensions: 44300
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)