Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15a13f
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 105 2e-23
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538... 93 1e-19
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 85 3e-17
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779... 80 1e-15
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 79 3e-15
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959... 33 0.22
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 29 3.6
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 3.6
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 28 6.2
11_03_0030 + 9089087-9089207,9090406-9090533,9090897-9090954,909... 27 8.2
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 27 8.2
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737... 27 8.2
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 105 bits (253), Expect = 2e-23
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Frame = +2
Query: 119 KCLTEENINQNLLNIQYAVRGPILQRALQIERELVKGVPKRFERVVRANCGDCHALGQKP 298
K L E +N+N+ +QYAVRG + RA ++++E ++++ N G+ HALGQKP
Sbjct: 11 KPLDYEELNENVKKVQYAVRGELYLRASELQKE--------GKKIIFTNVGNPHALGQKP 62
Query: 299 ITFIRQVLALVSFPELISSR---LDIPQDVKDRAKELLDDCTKGSVGSYSPSNGLNLVRS 469
+TF RQV+AL P L+ L P D RAK L G +G+YS S G+ +R
Sbjct: 63 LTFPRQVVALCQAPFLLDDPNVGLIFPADAIARAKHYLA-MAPGGLGAYSDSRGIPGIRK 121
Query: 470 RVAQYITNRDGVPSNPDDIYLGSGASDVIKSVLTLFV 580
VA++I RDG PS+P+ IYL GAS + +L +
Sbjct: 122 EVAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTII 158
>10_07_0056 +
12451510-12451554,12453099-12453149,12453754-12453804,
12453879-12453944,12454011-12454072,12454459-12454537,
12454618-12454722,12454824-12454934,12455017-12455154,
12455298-12455399,12455400-12455474,12455574-12455694,
12455768-12455922,12456004-12456078,12456160-12456363,
12457105-12457221
Length = 518
Score = 93.5 bits (222), Expect = 1e-19
Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Frame = +2
Query: 134 ENINQNL-LNIQYAVRGPILQRALQIEREL-VKGVPKRFERVVRANCGDCHALGQKPITF 307
+N+N + LN +YAVRG I+ A +++++L + F+ ++ N G+ +LGQKP+TF
Sbjct: 9 DNLNPKVVLNCEYAVRGEIVIHAQRLQQQLQTQPGSLPFDEILYCNIGNPQSLGQKPVTF 68
Query: 308 IRQVLALVSFPELIS---SRLDIPQDVKDRAKELLDDCTKGSVGSYSPSNGLNLVRSRVA 478
R+V+AL P L+ ++ D RA +L + G+YS S G+ +R +A
Sbjct: 69 FREVIALCDHPCLLEKEETKSLFSADAISRATTILASIPGRATGAYSHSQGIKGLRDAIA 128
Query: 479 QYITNRDGVPSNPDDIYLGSGASDVIKSVLTLFV 580
I +RDG P+N DDI+L GAS + ++ L +
Sbjct: 129 AGIASRDGYPANADDIFLTDGASPGVHMMMQLLI 162
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 85.4 bits (202), Expect = 3e-17
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = +2
Query: 242 FERVVRANCGDCHALGQKPITFIRQVLALVSFPELISSRLDIPQ----DVKDRAKELLDD 409
F+ +V N G+ +LGQKPITF R+VLAL + P L+ R +I D RAK++L
Sbjct: 86 FDEIVYCNIGNPQSLGQKPITFFREVLALCNHPNLLE-REEIKSLFSTDAIARAKKILSM 144
Query: 410 CTKGSVGSYSPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVIKSVLTLFV 580
+ G+YS S G+ +R +A I +RDG P+N DDI+L +GAS + ++ L +
Sbjct: 145 IPGRATGAYSHSQGIKGLRDEIAAGIASRDGFPANADDIFLTNGASPGVHMMMQLLI 201
>09_04_0231 +
15875955-15876005,15876141-15876191,15877911-15877976,
15878073-15878134,15878639-15878717,15878839-15878943,
15879032-15879142,15879492-15879629,15879821-15879895,
15880011-15880131,15880196-15880350,15880605-15880679,
15881124-15881327,15881396-15881536
Length = 477
Score = 79.8 bits (188), Expect = 1e-15
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Frame = +2
Query: 239 RFERVVRANCGDCHALGQKPITFIRQVLALVSFPELIS---SRLDIPQDVKDRAKELLDD 409
R R++ N G+ ALGQ+PI F R+VL+L P LI +R RA+++++
Sbjct: 31 RHARIIYCNLGNPQALGQRPINFFREVLSLCDNPSLIDRDEARALFSPCALKRARKIIES 90
Query: 410 CTKGSVGSYSPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVIKSVLTLFV 580
GSY+ S G+ +R VA I RDG PS PD+I+L GAS I ++ + +
Sbjct: 91 LPGRDSGSYTSSQGVRGLREAVADGIAARDGFPSKPDNIFLTDGASSAINMMMQILI 147
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 78.6 bits (185), Expect = 3e-15
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 19/168 (11%)
Frame = +2
Query: 134 ENINQNLLNIQYAVRGPILQRA--------------LQ-IERELVKGVPKR-FERVVRAN 265
+ IN +L +YAVRG I+ A LQ +++EL K F+ ++ N
Sbjct: 22 DTINPKVLKCEYAVRGEIVTHAQDFLRNLDYDLHFILQNLQQELQKNPDSLPFDEILYCN 81
Query: 266 CGDCHALGQKPITFIRQVLALVSFPELIS---SRLDIPQDVKDRAKELLDDCTKGSVGSY 436
G+ +LGQ+P+TF R+VL+L P L+ + D +RA ++LD + G+Y
Sbjct: 82 IGNPQSLGQQPVTFFREVLSLCDHPALLDKSETHALYSSDAIERAWQILDKIPGRATGAY 141
Query: 437 SPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVIKSVLTLFV 580
S S G+ +R +A I RDG ++ D+I+L GAS + ++ L +
Sbjct: 142 SHSQGIKGLRDEIAAGIAARDGFHASGDNIFLTDGASPAVHMMMQLLI 189
>11_06_0060 -
19695338-19695477,19695641-19695734,19695818-19695973,
19696109-19696168,19696384-19696602,19696607-19697036,
19698428-19698747
Length = 472
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 419 GSVGSYSPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVIKSVLTL 574
G SYS GL R +A+Y++ + DD+YL SG + I+ + ++
Sbjct: 91 GEHNSYSSCVGLEPARRSIARYLSRDLPYELSADDVYLTSGCAQAIEIICSV 142
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 422 SVGSYSPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASD 550
SV S +N + R ++++ DGV SNPDD+ + GA++
Sbjct: 294 SVMSARLANENDASRRLKSEFLIQFDGVTSNPDDLVIVIGATN 336
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 440 PSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVIKSVLTL 574
PS+ +N+V R I N P P I + S + K V+ +
Sbjct: 421 PSDNINMVEQRAQPQINNEQSSPQTPLHINITSARTPATKQVIQI 465
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 338 PELISSRLDIPQDVKDRAKELLD-----DCTKGSVGSYSPSNGLNLVRSRVAQYITNRDG 502
PEL S+ + D +RAK++L+ +CT+ NL + VAQ +R+G
Sbjct: 318 PELSSTTMIETSDPNERAKKVLETAEKLECTRYVTSKDIVEGSANLNLAFVAQIFHHRNG 377
Query: 503 VPSN 514
+ N
Sbjct: 378 LSDN 381
>11_03_0030 +
9089087-9089207,9090406-9090533,9090897-9090954,
9091055-9091096,9091678-9091796,9092187-9092253,
9092616-9092707,9092966-9093025,9093026-9093163,
9093242-9093346,9093450-9093533,9093699-9093823,
9094160-9094202
Length = 393
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 312 LMNVMGFCPRA*QSPQLALTTRSKRFGTPLTNSLSICKALCKIGPRTAYWIFS 154
L N +GF R + + A +RFG + +SL+ AL +GP+ A+ + S
Sbjct: 226 LFNQVGFYQRKAKFIKEASKICLERFGGDIPDSLNELLALKGVGPKMAHLVMS 278
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 409 LHERFSGIVFSIQRSQLGAISCRTVHHEQ 495
L + FS ++ S+ +++GA S RTV H++
Sbjct: 458 LWDEFSSLIKSVHANRMGAASKRTVIHDK 486
>01_06_1496 +
37772838-37772935,37773039-37773243,37773649-37773742,
37773830-37773933,37774370-37774618,37774706-37774819,
37775010-37775093,37775292-37775462,37775544-37775657,
37775751-37775894
Length = 458
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +2
Query: 434 YSPSNGLNLVRSRVAQYITNRDGVPSNPDDIYLGSGASDVI 556
Y+P+ G +R + + +G+ +PD + + +GA I
Sbjct: 114 YTPNAGTLELRKAICNKLQEENGISYSPDQVLVSNGAKQCI 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,444
Number of Sequences: 37544
Number of extensions: 289527
Number of successful extensions: 739
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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