Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a11f
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 38   LYTYPENFRAYKALIAAQYSGTDVKVA 118
            L+  PE+F A  ALI+ Q  G  + VA
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVA 1642


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 124 FRIWRDQQVRRLLEEVSCRKSACIRKCRWKG 216
           F IWRD    ++ E  +   +A   +  W G
Sbjct: 32  FEIWRDSLPTKMRELNATACAALYERVEWSG 62



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 493 KCDSLGNKEGACEKMSVQYF*GGQ*VRLC 407
           KC++L      C + SV Y  G    +LC
Sbjct: 354 KCNTLERTPSKCSQTSVHYSNGQTHSQLC 382


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 251 VANESLRGGDLATQARVWQWASWS 322
           V +E L   D +  A +W W S S
Sbjct: 397 VFDELLLDADWSVNAGMWMWLSCS 420


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 490 CDSLGNKEGACEK 452
           C SLG   G CEK
Sbjct: 39  CHSLGKAGGHCEK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,539
Number of Sequences: 438
Number of extensions: 4088
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)