Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15a10f
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...   106   1e-23
U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...   103   7e-23
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    56   2e-08
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    32   0.36 
L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine re...    31   0.63 
Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.    30   1.5  
Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical p...    28   5.9  
U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfi...    28   5.9  
U41542-7|ABO16445.1|  371|Caenorhabditis elegans Protein disulfi...    28   5.9  
U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfi...    28   5.9  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score =  106 bits (254), Expect = 1e-23
 Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
 Frame = +1

Query: 148 HSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLKKLPKL-RKDMTAVE 324
           H  FF    + + +  +Y       V+ + FY+  ++     AP K+L  L   DMT  E
Sbjct: 10  HKSFFTMDLSSWFEFTMYDAVFLVVVLGFFFYWLTRSEQPLPAPPKELAPLPMSDMTVEE 69

Query: 325 LRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTAPEKD 504
           LR+YDG +    +L  +NG I+DVTRG  FYGPG  Y    G DATR L T    A   +
Sbjct: 70  LRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQNAVSSE 128

Query: 505 YDDLSDLNSMEMESVREWEEQFRENYDLVGRL 600
           +DD + +++ E E+  EWE QF+  Y  VGRL
Sbjct: 129 WDDHTGISADEQETANEWETQFKFKYLTVGRL 160


>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score =  103 bits (248), Expect = 7e-23
 Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
 Frame = +1

Query: 223 VILYKFYYKYKTHCSKVAPLKKLPKL-RKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVT 399
           V+ + FY+  ++     AP K+L  L   DMT  ELR+YDG +    +L  +NG I+DVT
Sbjct: 20  VLGFFFYWLTRSEQPLPAPPKELAPLPMSDMTVEELRKYDGVKNE-HILFGLNGTIYDVT 78

Query: 400 RGNRFYGPGGPYAVFGGRDATRGLATFSVTAPEKDYDDLSDLNSMEMESVREWEEQFREN 579
           RG  FYGPG  Y    G DATR L T    A   ++DD + +++ E E+  EWE QF+  
Sbjct: 79  RGKGFYGPGKAYGTLAGHDATRALGTMDQNAVSSEWDDHTGISADEQETANEWETQFKFK 138

Query: 580 YDLVGRL 600
           Y  VGRL
Sbjct: 139 YLTVGRL 145


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 30/94 (31%), Positives = 47/94 (50%)
 Frame = +1

Query: 313 TAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTA 492
           T  +L  +DGT++   + +A+ G +++V     +YGPG  Y  F GRDATR   T     
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQE 161

Query: 493 PEKDYDDLSDLNSMEMESVREWEEQFRENYDLVG 594
                     L+  E+ S+R+W   + + Y LVG
Sbjct: 162 SGL-IATTHGLSHDELLSIRDWVSFYDKEYPLVG 194


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 133 NVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLK 285
           +++ K +G F  L+ + C P +   F S  +I+Y  Y K K   S  + L+
Sbjct: 208 DMEVKFAGLFAELELVLCFPTLALSFCSYILIIYSIYKKRKLAQSSSSSLR 258


>L15188-9|AAM22024.1|  618|Caenorhabditis elegans Hypothetical
           protein C14B9.2 protein.
          Length = 618

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +1

Query: 163 ETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQY 336
           E + TL  + F  F+  +  ++L +FY  +  HC K+AP   K   KL+   + V+L + 
Sbjct: 147 EEVVTLTTENFDDFIS-NNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVKLGKV 205

Query: 337 DGTQEGG-RVLMAVNGW-IFDVTRGNRFYGPGGPYAVFG 447
           D T E        V+G+    + R  R +   GP    G
Sbjct: 206 DATIEKDLGTKYGVSGYPTMKIIRNGRRFDYNGPREAAG 244


>AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein64 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 106 KMDSPPEVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYK 249
           ++  P    +++ K++  F +L+ + C P +   F+S  +I+Y  Y K
Sbjct: 157 ELTGPNWAYDMKVKYADLFASLELVLCFPTLALSFISYILIIYSIYKK 204


>Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical
           protein H06O01.1 protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 223 VILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQE 351
           + L KFY  +  HC K+AP   +  PKL  +   V L + D T E
Sbjct: 39  IALVKFYAPWCGHCKKIAPEYERAAPKLASNDPPVALVKVDCTTE 83


>AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.
          Length = 488

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 223 VILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQE 351
           + L KFY  +  HC K+AP   +  PKL  +   V L + D T E
Sbjct: 39  IALVKFYAPWCGHCKKIAPEYERAAPKLASNDPPVALVKVDCTTE 83


>Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical
           protein R11D1.7 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 EVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYY 246
           EV  V    +  F   K   C P + FVF  TF+++Y  ++
Sbjct: 14  EVFTVLGALAASFLVEKRFLCAPRMIFVFQQTFMLIYIIFF 54


>U41542-8|AAN39682.1|  437|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform b protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 226 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQEG 354
           IL +FY  +  HC  +AP   K   +L+++ + ++L + D T  G
Sbjct: 43  ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHG 87


>U41542-7|ABO16445.1|  371|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform c protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 226 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQEG 354
           IL +FY  +  HC  +AP   K   +L+++ + ++L + D T  G
Sbjct: 43  ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHG 87


>U41542-6|AAK39152.1|  493|Caenorhabditis elegans Protein disulfide
           isomerase protein2, isoform a protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 226 ILYKFYYKYKTHCSKVAP--LKKLPKLRKDMTAVELRQYDGTQEG 354
           IL +FY  +  HC  +AP   K   +L+++ + ++L + D T  G
Sbjct: 43  ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHG 87


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 470 SPLVASLPPKTAYGPPGP*NRF--PLVTSNIHPFT-AINTLPPSCV 342
           S +V +LP K +  P    + F  PLVTS+ +PFT  ++T P S V
Sbjct: 502 STVVHNLPTKPSSAPTLHPSTFSPPLVTSSENPFTFTLDTTPTSTV 547


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
            protein Y39D8B.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 268  KVAPLKKLPKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPY 435
            K + +  + KL K M+A ++ + + T   G  +M+         + + FYGPG PY
Sbjct: 1267 KTSKIDSMEKLHKSMSAAQMHEMNST---GYAIMSSQ-------QISEFYGPGSPY 1312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,683,153
Number of Sequences: 27780
Number of extensions: 331429
Number of successful extensions: 1044
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)