Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15a09f
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 33 0.13
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 32 0.40
12_01_0135 + 1042889-1044255,1045368-1045809 30 1.2
11_01_0133 + 1121392-1122731,1123417-1123858 30 1.2
04_04_0088 + 22723308-22724480 30 1.2
10_08_0690 - 19913111-19913488,19913585-19913941 29 2.1
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 29 2.1
02_04_0443 - 22969690-22969700,22970561-22970642,22971484-229716... 29 2.8
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 29 2.8
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 29 3.7
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 4.9
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 28 4.9
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 28 6.5
12_02_0810 - 23359541-23360018,23360108-23360237,23360366-233604... 27 8.5
11_06_0201 + 21178784-21179047,21179519-21180064 27 8.5
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 27 8.5
05_06_0243 - 26639497-26641173 27 8.5
03_02_1003 - 13127251-13128468 27 8.5
01_05_0014 - 17162664-17163500 27 8.5
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +1
Query: 4 IILKDQKPGSLLQVGKMKFTLLFVLVIVTAVAADEEAGVR---SNGRPDLVIGTITSQDS 174
+IL + +PGS + GK+ T L +V A GV SNG +L +
Sbjct: 314 LILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVGVTVGGSNGHFELNVFKPMIAAG 373
Query: 175 LIRSFRFNRPASPSSQSHFHRIAMAAGVRISAI 273
L+RS R AS S + + R A RIS +
Sbjct: 374 LLRSLRLLGDASVSFEKNCVRGIQANHKRISQL 406
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -1
Query: 386 ENPRPRAFRASRLTLLKP----MPPPATRIVGFWVCPTSRAVMADMRTPAAIAILWK*D 222
E PRP + R R + P PP R +G + P AV ++ +TPA++ LW D
Sbjct: 464 EPPRPPSHRGFRPSPPPPGVAYNSPPLARHIGRRLHPAPLAVASNRKTPASLGQLWNID 522
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 236 GSLWPPAFAYLPSRPGKWGKPRTRLSG 316
G WP F L SRPG G PR RL+G
Sbjct: 356 GLQWPGLFHILASRPG--GPPRVRLTG 380
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 236 GSLWPPAFAYLPSRPGKWGKPRTRLSG 316
G WP F L SRPG G PR RL+G
Sbjct: 347 GLQWPGLFHILASRPG--GPPRVRLTG 371
>04_04_0088 + 22723308-22724480
Length = 390
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 333 DAATSDPDSRVLGLPHFPGRDGRYANAGGHSD 238
D+ TS+P+ R++ LP +GRY GG D
Sbjct: 218 DSVTSNPEVRLIQLPPLMPINGRYLRGGGLDD 249
>10_08_0690 - 19913111-19913488,19913585-19913941
Length = 244
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 329 PPPATRIVGFWVCP-TSRAVMA 267
PPPA R++G W P T+R V+A
Sbjct: 11 PPPAVRVLGGWASPFTNRVVVA 32
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 363 SGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRY 262
SGL + V A AA D DS L L FPG + R+
Sbjct: 156 SGLAMRFVTAAAANDDSDSAELTLAGFPGAELRF 189
>02_04_0443 -
22969690-22969700,22970561-22970642,22971484-22971601,
22973513-22973740,22973948-22974231
Length = 240
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/71 (30%), Positives = 25/71 (35%)
Frame = -3
Query: 414 LSSPDLYVVGESSAARVSGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRYANAGGHSDP 235
L SP + AAR G + AA P L LP GH+
Sbjct: 6 LLSPAARLSLREGAARTVGKAAQRRDVVAADPAPPPMDLALPRLDPASPPPDQGHGHTGA 65
Query: 234 VEVRLRTRRRW 202
VR R RRRW
Sbjct: 66 ALVRCRRRRRW 76
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = -3
Query: 414 LSSPDLYVVGESSAARVSGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRYANAGGHSDP 235
+S+ D+ +GE+ A +VSG + ++ + T + P F G++G+Y + D
Sbjct: 382 VSAGDICAIGETIADKVSGTPLPTIKIEEPTVRMSFSINTSP-FVGKEGKYVTSRNLRDR 440
Query: 234 VEVRLRTRRRWSIE 193
+ L +E
Sbjct: 441 LYRELERNLAMKVE 454
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 212 LVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRP 361
L+R L S S P F S P + P R S AASA+ + L P
Sbjct: 6 LLRGLRSAASRTSPVFPTSASSPAPYVSPLLRRLYSAAAASAAASPALGP 55
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 206 RRLVRSLT-STGSLWPPAFAYLPSRPGKWGKP 298
R SLT +TGS +P A + P RP W P
Sbjct: 237 RAFPASLTGATGSAFPQALSNQPQRPHSWATP 268
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 290 GKPRTRLSGSLVAASASTTSILRP 361
G+ R LSG VA++A TTS+L P
Sbjct: 22 GRRREWLSGGAVASAARTTSLLHP 45
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 255 RSHICHHGPGSGANPEPDYP 314
R+ CHHG GS A P P P
Sbjct: 56 RAPPCHHGCGSAATPTPATP 75
>12_02_0810 -
23359541-23360018,23360108-23360237,23360366-23360496,
23360541-23360635,23362461-23362593,23363830-23364029
Length = 388
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +3
Query: 240 RYGRRRSHICHHGPGSGANPEPDYPGRWWRHRLQQRQS-*GPKRARPRILLQRTNLGTIN 416
R+G R S I PG N +Y R + Q+R+S P + + Q + T +
Sbjct: 226 RWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNMSPSSSSSSLTYQSCHPETPS 285
Query: 417 TYL-LYNSSLKHSPGCVTCVNETT 485
+ + L GC+T + ++T
Sbjct: 286 MIIGIEEQELHGGSGCITSIMKST 309
>11_06_0201 + 21178784-21179047,21179519-21180064
Length = 269
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 321 WWRHRLQQRQS*GPKRARPRILLQR 395
WWR +++ R G KRA R LL R
Sbjct: 203 WWRKKMEARVFGGKKRAELRELLAR 227
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = -1
Query: 374 PRAFRASRLTLLKPMPPPATRIVGFWVCPTSRAVMADMRTPAA 246
P A R L L P+PPPAT I+ P S V D PAA
Sbjct: 31 PFAHRHLHLDLHLPLPPPATAIL-VREDPPSVVVDVDTPLPAA 72
>05_06_0243 - 26639497-26641173
Length = 558
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 341 LKPMPPPATRIVGFWVCPTSRAVMADMRTPAAIAI 237
+ P PPP+T + P R+V A PAA +I
Sbjct: 1 MAPAPPPSTHSTAPFATPEVRSVAARRPRPAAASI 35
>03_02_1003 - 13127251-13128468
Length = 405
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 244 MAAGVRISAITAREVGQTQNPTIRVAGGGIGFNNVNLEARNARGRGFSY 390
MAA + S +TA T +PT R A + F N + AR RG+ +
Sbjct: 1 MAALLLSSHLTAASSSSTTSPTARPAPSFVSFRAANAAPKGAR-RGWPF 48
>01_05_0014 - 17162664-17163500
Length = 278
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 350 LTLLKPMPPPATRIVGFWVCPTSRAVMADMRTPAA 246
L LLK PPPA R VG V+ TP A
Sbjct: 105 LGLLKAAPPPAERYVGTLFTKAGDEVLHKYTTPTA 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,581,735
Number of Sequences: 37544
Number of extensions: 384772
Number of successful extensions: 1381
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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