Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15a09f
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-3|CAC70124.1| 218|Caenorhabditis elegans Hypothetical ... 32 0.27
AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical ... 32 0.27
AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protei... 32 0.27
AF172090-1|AAD48874.1| 218|Caenorhabditis elegans homeodomain p... 32 0.27
U56965-5|AAB52668.1| 478|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 30 1.4
AF303267-1|AAG50225.1| 478|Caenorhabditis elegans kynureninase ... 30 1.4
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 28 5.8
AF016665-2|AAC71181.1| 662|Caenorhabditis elegans Hypothetical ... 27 7.6
>AL033514-3|CAC70124.1| 218|Caenorhabditis elegans Hypothetical
protein Y75B8A.2b protein.
Length = 218
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
D + + S+ T WP A A +PS G+ R +GS + S+T ++ P T
Sbjct: 16 DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71
>AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical
protein Y75B8A.2a protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
D + + S+ T WP A A +PS G+ R +GS + S+T ++ P T
Sbjct: 16 DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71
>AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protein
protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
D + + S+ T WP A A +PS G+ R +GS + S+T ++ P T
Sbjct: 16 DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71
>AF172090-1|AAD48874.1| 218|Caenorhabditis elegans homeodomain
protein NOB-1A protein.
Length = 218
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 200 DQRRLVRSLTSTGSLWPPAFAYLPSRPGKWGKPRTRLSGSLVAASASTTSILRPET 367
D + + S+ T WP A A +PS G+ R +GS + S+T ++ P T
Sbjct: 16 DSKESITSVQQTPFFWPSAAAAIPSIQGESRSERESETGSSPQLAPSSTGMVMPGT 71
>U56965-5|AAB52668.1| 478|Caenorhabditis elegans Hypothetical
protein C15H9.7 protein.
Length = 478
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 459 SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVV 340
SLEN +RSC + YL + GE+S R + L I ++
Sbjct: 366 SLENLRSRSCYLTGYLEYLVKTLFGENSEQRTTKLSISII 405
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 230 STGSLWPPAFAYLPSRPGKWG-KPRTRLSGSLVAASASTTSIL--RPETRAA 376
S+ S PP + PS PG+ G +PRT + S+ A+A+ T RP +R+A
Sbjct: 502 SSSSKMPPPPSPSPSTPGRRGRRPRTLSTMSMEPAAAAVTPAPRGRPRSRSA 553
>AF303267-1|AAG50225.1| 478|Caenorhabditis elegans kynureninase
protein.
Length = 478
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 459 SLENASTRSCKVNTYLSSPDLYVVGESSAARVSGLKIDVV 340
SLEN +RSC + YL + GE+S R + L I ++
Sbjct: 366 SLENLRSRSCYLTGYLEYLVKTLFGENSEQRTTKLSISII 405
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 49 KMKFTLLFV-LVIVTAVAADEEAGVRSNGRPDLVIGTITSQDSLIRSFRFNRPASPSS-- 219
K +F L V L++ T V+ + + G ++ + S D+ + PASP+S
Sbjct: 2 KFRFLALCVGLLLATLVSGNGDPGASNSSSVATTVAASPSTDASSSAAPSQAPASPTSVD 61
Query: 220 QSHFHRIAMAAGVRISAITAREVGQTQNPT 309
S + A ++G +S ++ T P+
Sbjct: 62 PSATTQAAASSGAPVSTVSPSSGATTAEPS 91
>AF016665-2|AAC71181.1| 662|Caenorhabditis elegans Hypothetical
protein C49D10.8 protein.
Length = 662
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 76 LVIVTAVAADEEAGVRSNGRPDLVIGTITSQDSLIRSFRFN 198
L+I+ A ++G R+N PD V +T D+L ++R++
Sbjct: 364 LIIIDKDAMYVQSGHRNNSDPDFVSSEMTIDDALKLNYRWS 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,917
Number of Sequences: 27780
Number of extensions: 312224
Number of successful extensions: 1087
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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