Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14p24r
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.26 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.26 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.4  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 88  LSDNSCLINLI*FLKFVTSRHLSHKFR*NNSIEDNM-NFKMRL 213
           LS   C+   + ++ F TS  +S KFR    IEDN+   +M+L
Sbjct: 590 LSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKL 632


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 97  CPTVTVLEYLILSTLYTFYMNLDIQTLQHY 8
           CP    L YLI S+  +FY+ L +    +Y
Sbjct: 198 CPFTEHLGYLIFSSTISFYLPLFVMVFTYY 227


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 88  LSDNSCLINLI*FLKFVTSRHLSHKFR*NNSIEDNM-NFKMRL 213
           LS   C+   + ++ F TS  +S KFR    IED++   +M+L
Sbjct: 537 LSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDVATLRMKL 579


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 434 SKINTFANRYNTYE*FCND*FNAYNSVEQS*NLYYI 541
           S  N + N YN Y  + N+  N Y  +    N+ YI
Sbjct: 325 SNYNNYNNNYNNYNNYNNNYNNNYKKLYY--NINYI 358


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 37  SYKKYIMYLGLGTLGQ*LSDNSCLINL 117
           S   YI YLG   L   ++ + C IN+
Sbjct: 653 SMPTYICYLGKAYLMYAIAGSQCFINI 679


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,842
Number of Sequences: 438
Number of extensions: 4986
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)