Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14p24f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   2.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.1  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   8.1  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   8.1  

>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 456 GGTWRPSVTPTGSLPRPGSRPLGGTPTPVTNTSLKANPQP 575
           GG W  + T +  LP P + P+  T   V   +L   P P
Sbjct: 44  GGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 83


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 429  NLELTVQRGGGTWRPSVTPTGSLP 500
            NL +  +  G  WR S++P  SLP
Sbjct: 1991 NLRIIERSSGNDWRSSLSPGDSLP 2014


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 295  KR*MAAVRQSGLACRPATL*FASTTQTCSPCVTKTRRTPSA 417
            K+  A  RQSG     +     S T+T SP ++++R+ PS+
Sbjct: 1222 KKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSS 1262


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 173 ARGITPHSALSITSSKHGARPFPNWRSRSRDKFRAVIRHRARASVVR 33
           A G+   SAL++TSSK   R   N    SR    +  R R+ +   R
Sbjct: 88  ALGLPQPSALALTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANR 134


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 555 RMCSSPESEYLPEDESRVSASCRSGSLM 472
           R CS   + +LP+  S+V +SC + S +
Sbjct: 286 RDCSITSATWLPQSTSQVISSCSANSAL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,217
Number of Sequences: 5004
Number of extensions: 43282
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)