Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14p24f
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.31 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   6.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +3

Query: 492 SLPRPGSRPLGGTPTPVTNTSLKANPQPSR 581
           S PR GS P   TPTP T   L    Q  R
Sbjct: 149 SFPRGGSLPTPVTPTPTTVQQLLRRAQIRR 178


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -3

Query: 113 PFPNWRSRSRDKFRAVIR-HRARASVV-RSWG 24
           P+PNW     +K  ++I   R R     R WG
Sbjct: 94  PYPNWEMNDINKIDSIINIIRVRVDACDRLWG 125


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 21  ASPRSNDRRPRPVSYYSSKFIS*ARSP 101
           ASPRS +  P P    +S     ARSP
Sbjct: 736 ASPRSPNASPSPAEQCASTTTITARSP 762


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 498 PRPGSRPLGGTPTP 539
           P PG   +G TPTP
Sbjct: 115 PSPGMGHMGHTPTP 128


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 422 SSADGVLRVLVTQGEHVCVV 363
           SSA+G  + + T G H+ +V
Sbjct: 41  SSAEGWFKAIGTCGSHIIIV 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,462
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)