Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14p14r
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 30 0.14
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 0.24
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 0.73
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 26 2.2
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 25 5.2
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 5.2
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 6.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.0
SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit l44... 24 9.0
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.0
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 24 9.0
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 24 9.0
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 9.0
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 24 9.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.0
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 30.3 bits (65), Expect = 0.14
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 296 TTTLIKEGDKYKTITVD----SNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHV 129
T T G + T+TV S GT V ++ T ++T+ T YT G + V
Sbjct: 1063 TVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYT--GTETSTV 1120
Query: 128 VENPNGTAT 102
P GTAT
Sbjct: 1121 TVTPTGTAT 1129
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.5 bits (63), Expect = 0.24
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 283 INVVVGLNCKSFRIWSSGRPTNLRNPSK 366
+N + GLN KS+R+ +S P+NL NP++
Sbjct: 1369 VNTIGGLNPKSYRLITS--PSNLTNPTR 1394
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 0.73
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -1
Query: 410 MSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQF--KPTTTLIKEGDKYK-TITVDSN 240
+S G + + + ++G+PEDQ RK F +++L+K+ ++K D
Sbjct: 985 LSIAGNSSLWQARKGLASGISYLGIPEDQKRKTFSFDTSKSSSLLKKLYRFKHDPNPDVA 1044
Query: 239 GTKETVFESGVPFD 198
T ++++ VP D
Sbjct: 1045 KTMGEIWDTLVPSD 1058
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 2.2
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Frame = -1
Query: 296 TTTLIKEGDKYKTITVDSNGTKETVFE-----SGVPFDETIDGVLTIKTTYTVDGNTVT- 135
TTT+ +Y TI +++GT E G T G + TT +V+
Sbjct: 222 TTTIYSGDQEYTTILAEASGTVPGTVEVIEPAVGTVTTTTYSGSVEYTTTLVPASGSVSG 281
Query: 134 --HVVENPNGTATFKREYGDTELKVTISA 54
VVE GT T + G T+ A
Sbjct: 282 TVEVVEPAVGTVTTTLQSGSQAFTTTVPA 310
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 271 SPSLINVVVGLNCKSFRIWSSGRPTNLRNPSKFSSLSNVYFLPKKDMV 414
S SL+ ++G+N F +W + R ++L + ++ N F+ M+
Sbjct: 76 SRSLVLSIIGINVGVFALWRAPRFSHLNRFLQKYAVMNPIFINMPSMI 123
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 436 YVSTWATQPCLSWVKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSS 299
Y S A+ P S + S+ ++ S S S +RSG+ SSS
Sbjct: 503 YSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSS 548
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 6.8
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Frame = -1
Query: 293 TTLIKEGDKYKTITVDS-NGTKETVFESGVPFDETI-----DGVLTIKTTYTVDGNTV-- 138
TT + G T T+DS NGT E P T+ G TT +TV
Sbjct: 113 TTTLYSGSLEFTTTLDSANGTTPATIEVVEPAAGTVTTTIYSGTTPFNTTLASATDTVPG 172
Query: 137 -THVVENPNGTATFKREYGDTELKVTIS 57
VVE GT T G E T++
Sbjct: 173 TVEVVEPEAGTVTTTVYSGTQEYTTTLA 200
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 379 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 239
++ KTS S L P+T S ++ H + + P PST+T
Sbjct: 812 VQPKTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 6.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -2
Query: 391 NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTA---TVQRRQF 221
++ S +S S S+ ++ T S + SSS S ++++RPS S++ T+ F
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS---SSSSSSSRPSSSSSFITTMSSSTF 249
Query: 220 LSPVCLSTKPS 188
+S V ++ S
Sbjct: 250 ISTVTVTPSSS 260
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 379 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH 287
++KK + +LSLS SP S F SS H
Sbjct: 650 LDKKKMLETLSLSDSPNPESITFISSKFVDH 680
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 6.8
Identities = 21/91 (23%), Positives = 33/91 (36%)
Frame = -1
Query: 293 TTLIKEGDKYKTITVDSNGTKETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHVVENPN 114
TT+ +G+ TIT+ N V S T +++ +T + + T +
Sbjct: 48 TTIYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNT 107
Query: 113 GTATFKREYGDTELKVTISADKWDGVAYRYY 21
T TF D V D V Y Y+
Sbjct: 108 KTITFFSGTSD-YTSVYYDTTGTDDVVYEYH 137
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 9.0
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -2
Query: 403 SWVKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTATVQRRQ 224
S + +T S TS SLS S S T S + SSS+ S ++++ P+ +++T+
Sbjct: 238 SSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIIS--SSSSSSSSPTSTSSTISSSS 294
Query: 223 FLSPVCLSTKPSM 185
S ST ++
Sbjct: 295 SSSSSPTSTSSTI 307
>SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit
l44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 100
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 397 VKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPS 254
+ N + K + L L+V+ K S + +L + K TN++PS
Sbjct: 11 ILNVNPFSKASQSAKLLLAVASKETSNSLYGLNLITSLASKDTNSKPS 58
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 337 RPTNLRNPSKFSSLSNVYFLPKKD 408
RPT+ + SLS+ YFLP K+
Sbjct: 45 RPTHRKGHHHKHSLSHQYFLPPKN 68
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 24.2 bits (50), Expect = 9.0
Identities = 23/97 (23%), Positives = 41/97 (42%)
Frame = -1
Query: 413 TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 234
++ FL Y EE D L+ V DQ + L T + ++ D + + DSN
Sbjct: 233 SLDFLPPAYNDTAEELADLLLQ-VAQHYDQCSEALNIYDTLSDAEKKDLQEVLQSDSNHV 291
Query: 233 KETVFESGVPFDETIDGVLTIKTTYTVDGNTVTHVVE 123
+ E D+TI ++ +Y ++ T ++E
Sbjct: 292 PSVLTELRSGLDQTIHYFNAVQ-SYKSKVDSATSILE 327
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 223 TVSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWS 330
T FV S V+ + +SP VV G K+ +IW+
Sbjct: 98 THQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWN 133
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 185 GVLTIKTTYTVDGNTVTHVVENPNGTATFKREYG 84
G +TIK+T +D + P+G EYG
Sbjct: 203 GTITIKSTRRIDKGEQIFLCYGPHGNDKLFTEYG 236
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 9.0
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 407 SFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTI 255
S LG+ YT + G+L G+P+D K F +TL + D++K +
Sbjct: 277 SMLGQ-YTTSEDGKIPGYLDLEGVPKDS--KATTF-AASTLHVDNDRWKGV 323
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 268 NTRPSPSTATVQRRQFLSPVCLSTKPSM 185
++RP PS+++ +R Q LS + ++ P M
Sbjct: 470 SSRPKPSSSSRRRSQSLSAMLKTSNPYM 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,439
Number of Sequences: 5004
Number of extensions: 42133
Number of successful extensions: 172
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -