Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14o20f
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    31   0.53 
U40424-5|AAA81461.2|  638|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical ...    29   3.7  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    28   4.9  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    28   4.9  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    28   4.9  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical p...    27   8.6  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +3

Query: 336 DNMKQKSRKEISEKNKEAYIQAMEMEVVTEA-------DVTRALINIKEDKIEMKKTGGG 494
           D +++ S  EI     E  I A E+ V+T+        D+T  L  I ED  ++ +T   
Sbjct: 523 DELREASEIEIQALRTEKSILAAEIRVLTQKIEDEEQDDITEQLAKIVEDTSQLTRTLEE 582

Query: 495 FWKPKSTETDAKVLSIIKEQTEPLHNPYD 581
           + + + T  DA++L++ K+  + + +  D
Sbjct: 583 Y-RERITGKDAEILNLRKQLEKEISHTED 610


>U40424-5|AAA81461.2|  638|Caenorhabditis elegans Hypothetical
           protein C24A3.1 protein.
          Length = 638

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 303 PRDVDQLKALYDNMKQKSRKEISEKNKEAYIQAMEME 413
           P+D+++L A  DN+K +    I  + +E Y+   E++
Sbjct: 530 PQDLNELSAKADNIKHQLNTRIDNEEEERYLAIKELQ 566


>U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical
           protein F55F8.2a protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +3

Query: 243 KKKEVWITITSKYNSSCSSGPRDVDQLKA---LYDNMKQKSRKEISEKNKEAYIQAMEME 413
           K K+V  T   + ++ C    R   +L+    +  N KQK  +    K KEA   A + E
Sbjct: 54  KPKKVENTERPEEDAKCVEERRLAKKLRRKEQMAANRKQKKERLAKRKQKEAESSAKKSE 113

Query: 414 VVTEADVTRALINIKEDKIEMKKTGGGFWKPKSTETDA 527
             TE    +     KE K       G   KPK ++ +A
Sbjct: 114 NATETTTEKP----KEQKKRKGGENGDTGKPKKSKKEA 147


>AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical
           protein F40G9.5 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 363 EISEKNKEAYIQAMEMEVVTEADVTRALINIKEDKIEMKKTGGGFWKPKSTETDAKV 533
           E S+      + +M  +V  + DV + + N+K+ K++MKK      +P     D ++
Sbjct: 382 EESQNRLMMTLDSMTDDVTEKCDVAQIIDNLKQCKVQMKKNRKSLGRPLLVVFDEEI 438


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 273 SKYNSSCSSGPRDVDQLKALY-DNMKQKSRKEISEKNKEAYIQAMEMEVVTEADVTRALI 449
           S+ N+  +    D D+LK  +   +  K +K+I   +KEA+I A     +  ++  + +I
Sbjct: 75  SEENAKLAELQNDRDELKVKWASRLLGKIKKDIQNDDKEAFISA-----INGSEPNKCII 129

Query: 450 NIKEDKIEMKK 482
           ++ + K +M++
Sbjct: 130 SVADQKGKMRR 140


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 273 SKYNSSCSSGPRDVDQLKALY-DNMKQKSRKEISEKNKEAYIQAMEMEVVTEADVTRALI 449
           S+ N+  +    D D+LK  +   +  K +K+I   +KEA+I A     +  ++  + +I
Sbjct: 95  SEENAKLAELQNDRDELKVKWASRLLGKIKKDIQNDDKEAFISA-----INGSEPNKCII 149

Query: 450 NIKEDKIEMKK 482
           ++ + K +M++
Sbjct: 150 SVADQKGKMRR 160


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 273 SKYNSSCSSGPRDVDQLKALY-DNMKQKSRKEISEKNKEAYIQAMEMEVVTEADVTRALI 449
           S+ N+  +    D D+LK  +   +  K +K+I   +KEA+I A     +  ++  + +I
Sbjct: 111 SEENAKLAELQNDRDELKVKWASRLLGKIKKDIQNDDKEAFISA-----INGSEPNKCII 165

Query: 450 NIKEDKIEMKK 482
           ++ + K +M++
Sbjct: 166 SVADQKGKMRR 176


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 210 ESKRTGGIIIQKKKEVWITITSKYNSSCSSGPRDVDQLKALYDNMKQKSRKEISEKNKEA 389
           E K+    +I   K+ W T+  +        PR ++ L    + ++     +   KN+EA
Sbjct: 82  EEKQDNRQVILSSKD-WSTLLGRLKDGGLDVPRLLEGLNIRNEEIETNKLPDFEIKNEEA 140

Query: 390 YIQAMEMEVVTEAD 431
           YI    + + T  D
Sbjct: 141 YILGRRLVIGTGTD 154


>Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 167 FFLLSVICSTFSN-LFLRHFV*IIKILNQNMQRKKSPRT*C 48
           FF+ S ICS FS  LF+ H++ +I + N+ +   KS    C
Sbjct: 262 FFMFSPICSPFSYILFVPHYLNVI-LGNKKVSEAKSTTEGC 301


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 285 SSCSSGPRDVDQLKALYDNMKQKSRKEISEKNKEAYIQAMEMEVVTEA-DVTRALINIKE 461
           SS   G   + Q     +  +QK ++ ++ +++E  +QA       E  DVT+ +   KE
Sbjct: 557 SSMREGLTILQQYTEELEQERQKYQEMLTARSEETSVQAEPAGGEEEMLDVTKQIEEAKE 616

Query: 462 DKIEMK 479
           +KI +K
Sbjct: 617 EKIRLK 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,888
Number of Sequences: 27780
Number of extensions: 283585
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)