Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14o19f
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical ... 229 2e-60
AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical... 105 3e-23
AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical... 61 5e-10
U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical pr... 54 6e-08
Z81052-3|CAB02871.1| 160|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 38 0.005
U40420-2|AAK84526.3| 245|Caenorhabditis elegans Hypothetical pr... 34 0.088
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 28 4.4
>AC024878-1|AAK85513.1| 173|Caenorhabditis elegans Hypothetical
protein Y97E10AL.3 protein.
Length = 173
Score = 229 bits (559), Expect = 2e-60
Identities = 100/152 (65%), Positives = 122/152 (80%)
Frame = +1
Query: 142 MTTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK 321
MTTLRPF DM +FNNVNLD TETYG FY Y+ ++PEY+QV E P+GEIM Y+MGK
Sbjct: 1 MTTLRPFDVMDMFKFNNVNLDINTETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGK 60
Query: 322 AEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINM 501
EG NWHGHVTAL+V+P++RRLGLAA +M LE SE ++AYFVDLFVRVSNK+AI +
Sbjct: 61 IEGRDTNWHGHVTALSVAPNFRRLGLAAYMMEFLERTSEARRAYFVDLFVRVSNKIAIEL 120
Query: 502 YKNLGYIVYRTVLEYYSGDPDEDAYDMRKACS 597
YK LGY+VYR ++ YY+GD DEDA+DMRK+ S
Sbjct: 121 YKKLGYVVYRQIIGYYTGDRDEDAFDMRKSLS 152
>AF047659-11|AAC04428.1| 182|Caenorhabditis elegans Hypothetical
protein K07H8.3 protein.
Length = 182
Score = 105 bits (251), Expect = 3e-23
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Frame = +1
Query: 169 EDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK-AEGHGENW 345
+D++ N NL L E Y + +Y + WP+ + E G ++GY++ K E GE
Sbjct: 9 DDLMSMQNANLMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKMEEDPGEEP 68
Query: 346 HGHVTALTVSPDYRRLGLAATLMN-LLEEVSEKKKAYFVDLFVRVSNKVAINMYKN-LGY 519
HGH+T+L V YRRLGLA +M+ + E A +V L VRVSN+ A+N+YKN L +
Sbjct: 69 HGHITSLAVKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALNLYKNTLKF 128
Query: 520 IVYRTVLEYYSGDPDEDAYDMRK 588
+ T +YY+ EDAY MR+
Sbjct: 129 EIVDTEPKYYA--DGEDAYAMRR 149
>AF016450-12|AAB65989.1| 278|Caenorhabditis elegans Hypothetical
protein B0238.10 protein.
Length = 278
Score = 61.3 bits (142), Expect = 5e-10
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = +1
Query: 208 LTETYGLSFYTQYLAHWPEY-FQVVESPSGEIMGYIMGKAE--GHGENWHGHVTALTVSP 378
L+E Y + Y +L +WPEY F + + +G ++ K E +G G++ L V
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGR-CKGYLAMLAVDE 175
Query: 379 DYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGYIVYRTVLEYYSGD 558
RRLG+ L+ + + K + L VSNK A +Y NLG+I + +L+YY
Sbjct: 176 SCRRLGIGTRLVRRALDAMQSKGCDEIVLETEVSNKNAQRLYSNLGFIRQKRLLKYYLNG 235
Query: 559 PD 564
D
Sbjct: 236 GD 237
>U00067-6|AAL08037.1| 167|Caenorhabditis elegans Hypothetical
protein F54E7.9 protein.
Length = 167
Score = 54.4 bits (125), Expect = 6e-08
Identities = 33/100 (33%), Positives = 49/100 (49%)
Frame = +1
Query: 289 SGEIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLF 468
+GE + + K E ++ + V P +R GL + LM+ ++E + K L
Sbjct: 65 NGEAIAIVAVKPENFETGRVLYIRSFGVHPRHREAGLGSFLMDFVDEKGKLLKLPHAMLH 124
Query: 469 VRVSNKVAINMYKNLGYIVYRTVLEYYSGDPDEDAYDMRK 588
V+ SNK AI YKN G+ V V +YY DA+ MRK
Sbjct: 125 VQTSNKTAIEFYKNRGFNVDCLVPQYYQRCSPPDAFIMRK 164
>Z81052-3|CAB02871.1| 160|Caenorhabditis elegans Hypothetical
protein D2023.4 protein.
Length = 160
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 352 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGYI 522
H+ L + P +RR+GLA TL L E++ K ++ V NK AI +Y + Y+
Sbjct: 80 HMEDLYIRPQFRRMGLARTLWKKLAELARDKGIVRLEWAVLDWNKNAIALYDTVDYV 136
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 352 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRV--SNKVAINMYKNLGYIV 525
++ ++ V +RRLGLA L+N L Y +F+ V +N A++ YK G+
Sbjct: 99 YILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFYKMHGFEF 158
Query: 526 YRTVLEYY 549
+ ++ EYY
Sbjct: 159 HASLPEYY 166
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 352 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRV--SNKVAINMYKNLGYIV 525
++ ++ V +RRLGLA L+N L Y +F+ V +N A++ YK G+
Sbjct: 126 YILSIAVDKKFRRLGLATRLLNNLMSSLSDHPPYPRAVFLHVLSTNSAALSFYKMHGFEF 185
Query: 526 YRTVLEYY 549
+ ++ EYY
Sbjct: 186 HASLPEYY 193
>U40420-2|AAK84526.3| 245|Caenorhabditis elegans Hypothetical
protein F40F4.7 protein.
Length = 245
Score = 33.9 bits (74), Expect = 0.088
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = +1
Query: 151 LRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEG 330
L T ++L+ +N D Y FY + A + + + ++G + + +
Sbjct: 98 LGEITPHNILQLKKLNEDVFPIAYNDKFYVE--ARYCGELGRLAYYNDVVVGAVCCRIDD 155
Query: 331 HGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEK-KKAYFVDLFVRVSNKVAINMYK 507
+ ++ L YR++G+ L++ ++ K ++ + L V+V+NK A+ Y+
Sbjct: 156 ISDEKSLYLMTLGTLAAYRQIGIGTILIDYALKLCNKMEEIKTMYLHVQVNNKNAVQFYE 215
Query: 508 NLGYIVYRTVLEYYSGDPDEDAY 576
G+ + +YY P DAY
Sbjct: 216 KHGFTNDGIIEDYYRISP-RDAY 237
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 295 EIMGYIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVD 462
++MG + KA G+ ENW A TV+ D + + EV ++K V+
Sbjct: 729 DLMGSALEKAFGNQENWTDKSAAKTVTSDAITNAIETKFTGISREVLLEQKERLVE 784
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,837
Number of Sequences: 27780
Number of extensions: 247619
Number of successful extensions: 548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -