Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14o14r
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 526 PVVLNLLYSAMG*HNL 573
           P+  NL YSA+  HNL
Sbjct: 258 PLTQNLYYSALSSHNL 273


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 112 PTINNRIQYSFTKLYINACNF 174
           PTI    Q+SFTKL +NA  F
Sbjct: 583 PTIQ---QFSFTKLPMNAGEF 600


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 538 NLLYSAMG*HNL 573
           NL YSAM  HNL
Sbjct: 261 NLYYSAMSSHNL 272


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -1

Query: 727 GFDCIYKCLLDVNCTT--MFNI 668
           GF C +   +DV C+T  +FN+
Sbjct: 256 GFVCDFYIAMDVTCSTSSIFNL 277


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 449  LNGDTIIVTRNRLSDELCNNTFI 517
            +NG+ I+V+RN+   ++  N  I
Sbjct: 1531 VNGEKIVVSRNKAYQKVEENEII 1553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,173
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)