Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14o09r
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.063
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.77 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 0.063
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 51  YGDRRHWNCSFQKTQCLPTHFGRRQGHPSQYYRSHGHHPG 170
           + D  +W C+ +KT    T  G+ +GH     R  G + G
Sbjct: 60  FNDENYWQCNDKKTDIEETGRGKGRGHGKGGSRGRGGNRG 99


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 99  LPTHFGRRQGHPSQYYRSHGHHP 167
           LP  +   Q HPSQY+   G  P
Sbjct: 312 LPPSYHPHQHHPSQYHPHRGSSP 334


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 362 WIIAPCWIFGPKWMACVTRTMLTSL 436
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 362 WIIAPCWIFGPKWMACVTRTMLTSL 436
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 362 WIIAPCWIFGPKWMACVTRTMLTSL 436
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 415 SNTCHPLRPKYPAGCYYPTRCRNTPGYF 332
           S++C        +  Y  T CR  PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 155 VTTIILTWVPLPSSKMRW*ALCLLERAIPMTPIPVVLTSISSFT 24
           V T + T +  P++ +    + +    +P+T +P   TSI+S T
Sbjct: 831 VVTNVTTTINTPTTSV----ISMSGTTVPITSLPASSTSINSIT 870


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 579 LKGSGSW*EQYQRTVGTIDSR 641
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,508
Number of Sequences: 438
Number of extensions: 6134
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)