Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14o08r
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   147   1e-36

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  147 bits (357), Expect = 1e-36
 Identities = 77/168 (45%), Positives = 97/168 (57%)
 Frame = -3

Query: 641 IATAFIGYVLP*GQISFWGATVITNLLSAXPYLGTILVN*IXGGFAVDNATLTRFYTFHX 462
           I TAF+GY LP  Q+SFWGATVITNLLSA P++G  LV+ + GGF+V N TL RF++ H 
Sbjct: 125 IITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHY 184

Query: 461 XXXXXXXXXXXXXXXXLHQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXX 282
                           LH  GS+NPLG+  N+D+IP +P++  KD               
Sbjct: 185 LMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMA 244

Query: 281 XINPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAXAILRSIPNKLGGV 138
             NPY   +PD   PA+PL TP+ I PE Y L   AILR+IPN   GV
Sbjct: 245 FYNPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLGV 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,658
Number of Sequences: 5004
Number of extensions: 23511
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)