Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14o01f
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   9.3  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 370 CEHRTSNTCXPLRPKHPAGCYYPTRXRNTPGYFC 471
           C+   +N+C  L P+   GC  PT  RNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 YSYPS*XNGXNSAXVLFSPTTTTFQLL 227
           YSYPS     +S  V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 370  CEHRTS--NT-CXPLRPKHPAGCYYPTRXRNTPGY 465
            CE   +  NT C P+  K P  C+   R  +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,196,858
Number of Sequences: 27780
Number of extensions: 129623
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)