Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14o01f
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.56 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.56 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.56 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   0.74 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 438 WIIAPCXMFGPKWXACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 438 WIIAPCXMFGPKWXACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 438 WIIAPCXMFGPKWXACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 412 WAEVXGMCYSYDAHILVVILLREFGMV 332
           W +  G C S   HI++V L  EFG++
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLI 69


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 157 HLEXMVPTVRWYCSHQLPLPF 219
           H    +PT+ W+ + Q P  F
Sbjct: 326 HALITLPTIFWFLTRQNPAAF 346


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 204 LVRTIPXHCWXH 169
           L  T+P H W H
Sbjct: 533 LTDTVPIHTWIH 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,848
Number of Sequences: 438
Number of extensions: 1542
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)