Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14n24f
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    28   0.88 
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    27   2.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   4.7  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   6.2  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.2  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   6.2  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.2  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   8.2  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   8.2  

>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 204 LRGSSFPCWIIGAL---AKSQDLSVRVLYTYKYSPGDSSSLLVGWNQPGY*NYRGLRIRN 374
           L G    CWIIG +   A    +S    Y++ Y     +++ VG  Q     Y     RN
Sbjct: 195 LPGGKLLCWIIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYYYSWSNRN 254

Query: 375 SLLWW 389
           S L+W
Sbjct: 255 SGLYW 259


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 191 PPAILVPSKSTASSIRLIRSAAGIPSASW*LRLMGSNSGRTCPEAQRTWHKAIQSTNS 18
           PP +  P+    SS  + +SAA  P AS  +R+   N      +  R++ +   +T S
Sbjct: 254 PPLVAAPTSPNTSSTLITQSAAPTPIASTSIRINSFNPRNGSIKRWRSFSRHSSATYS 311


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 409 TIAMHGSFNTRNLNNDIAIITVPRINFNN 495
           T A +GS    +  N+  II +PR +F+N
Sbjct: 547 TTASNGSMTPSSSQNNSVIIDIPRSHFDN 575


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -2

Query: 455 SLFKFRVLKLPCIAMVLVVTLVPPEKRVTDPKTAVISVPWLVPSHQQ*AAVTRRVF 288
           SLFK    K  C+ + +   L P  K       A+ S  W+  + ++  A  +R F
Sbjct: 111 SLFKILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDSFKWVASNIEKLGANPKRGF 166


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 459 NIIVQVSSVEATVHSNGSGCDSGATREESY 370
           N  V  SS   T H++G G  SGA    +Y
Sbjct: 222 NFPVHASSNYNTTHTSGGGVHSGAATPNAY 251


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 415 AMHGSFNTRNLNNDIAIITVPRINFNNNI 501
           A++ S    NLN +I   +VP  NF+N++
Sbjct: 140 AIYSSSMATNLNKNINSTSVPAYNFHNSM 168


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 245 KSTNNPARKG*SPKRAVDPPAILVPSKSTAS 153
           +S+N P+ +    K+A +P A   PS+ST++
Sbjct: 32  ESSNTPSTETQPEKKAEEPEAAAEPSESTST 62


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 284 SIEDPHTEVLRFCKSTNNPARKG*SPKRAVDPPAILVPSKSTAS 153
           ++ DP         +  +P++K  SPK+A   PA + P ++T++
Sbjct: 53  AVTDPSNAKKEINMAIESPSKKATSPKKAT--PAAVAPVEATSA 94


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 549 DEGEERLRAVGYRYTLNVVVEIDPGNSNDGNIIVQVSSVEATVHS 415
           ++ E +   + Y Y+ NVV E     + DGN    +    + V S
Sbjct: 354 EQPEPQYSRIAYFYSYNVVYEASIQTATDGNDFANIPRYVSMVQS 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,215
Number of Sequences: 5004
Number of extensions: 55799
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)