Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14n24f
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 29 2.7
12_01_0107 - 843820-846335,846400-846511 29 3.6
07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219... 29 3.6
06_03_0788 - 24603849-24603949,24604030-24604123,24604206-246044... 29 3.6
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 29 3.6
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 28 4.8
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 6.3
04_03_0802 - 19830614-19831275,19831426-19831507 28 6.3
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 28 6.3
04_03_0203 + 12640502-12641074 27 8.4
03_05_0721 + 27134277-27134666,27135401-27135466,27137036-271371... 27 8.4
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -1
Query: 471 SNDGNIIVQVSSVEATVHSNGSGCDSGATREES 373
++DG+I +V++ ++ VH +G+G D+ T +S
Sbjct: 265 TDDGSISNEVATTQSMVHMDGAGSDNNFTEVQS 297
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -1
Query: 471 SNDGNIIVQVSSVEATVHSNGSGCDSGATREES 373
++DG+I +V++ ++ VH +G+G D+ T +S
Sbjct: 179 TDDGSISNEVATTQSMVHMDGAGFDNNFTEVQS 211
>07_03_1734 +
29120474-29120705,29120839-29120949,29121854-29121966,
29122119-29124128
Length = 821
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 70 VLPEFEPISLNYHEAEGIPAAERIKRIEEAVDFDGTRIAGGSTARL 207
VL EFE +S +Y + G+P E+I ++E +D + ++ G A L
Sbjct: 644 VLLEFEDLSWDYVQNIGLP-NEQIHPVDEVLDEENLGVSPGFVASL 688
>06_03_0788 -
24603849-24603949,24604030-24604123,24604206-24604413,
24604727-24604839,24605679-24605816,24605916-24605999,
24606517-24606675,24606754-24606837,24607505-24607840,
24607941-24608042,24608970-24609153,24609699-24610044,
24610444-24610591,24611053-24611203,24611786-24611867,
24612314-24612362
Length = 792
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 274 TRTLRSCDFARAPIIQQGKDDPLSVQW--ILLRSWCHQSPQLPQFA*YAL 131
T+ + CDF + ++ + +DD +++W + W +Q + +F+ +AL
Sbjct: 56 TKVYQQCDFLKFSLLPEPEDDRQNIEWGKFMRFLWDNQRVAVVRFSSFAL 105
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 390 HQSHNQNHCYAR*LQHSKLEQ*YCHHYCSQDQFQQQHSAYSDTQ 521
HQ HNQNH Q+ + +Q Y H Q QQQ + Q
Sbjct: 183 HQHHNQNHHQQ---QYQQQQQQYQHQNLQQQYQQQQQNLQQQYQ 223
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 39 FVPSPLGFRTRPARVRAHQPQLPRG*RYSRC 131
F+P+P R RP R AH+ + R R SRC
Sbjct: 589 FLPTPESRRRRPERAAAHEDRTAR--RRSRC 617
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 235 LVLLQNRRTSVCGSSILTNTRLVTAAHC 318
L LL N CGS I+T TR VT A C
Sbjct: 268 LALLNNN----CGSRIITTTRSVTVASC 291
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 236 NNPARKG*SPKRAVDPPAILVPSKSTASSIRLIRSAAGIPSAS 108
+ PAR+ P A P A+L+ + A+ + SAA +P+A+
Sbjct: 157 SGPARRAVPPAAASMPAAVLLAAAVPAALLAAAVSAAAVPAAA 199
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 228 WIIGALAKSQDLSVRVLYTYKYSPGDSSSLLVGWNQ 335
WI+ AL K+ +V L YK+S D++S + W Q
Sbjct: 747 WILSALNKATGKTVTSLEAYKFS--DATSAIYSWWQ 780
>04_03_0203 + 12640502-12641074
Length = 190
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 233 NPARKG*SPKRAVDPPA-ILVPSKSTASSIRLIRSAAGIPSASW 105
+PA S A +PPA L+P++ + R+A G+P +W
Sbjct: 18 SPAAASISVSAAAEPPANSLLPAEQFLRAHNEARAAVGVPPLAW 61
>03_05_0721 +
27134277-27134666,27135401-27135466,27137036-27137191,
27137286-27137453,27137544-27137711
Length = 315
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 151 EEAVDFDGTRIAGGSTARLGDHPFLAGLLVLLQNRRTSVCGSSIL 285
EEA DG I+G + D P++ L+ L+ RR + G IL
Sbjct: 81 EEAAGIDGFVISGSCSDAHADDPWIVALVDLI--RRQNAAGKRIL 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,035,096
Number of Sequences: 37544
Number of extensions: 412901
Number of successful extensions: 1269
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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