Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14n21f
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   1.4  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   3.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.6  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   5.6  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 122 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCV 217
           ++ R V ++ ITNA C + Y   VI G+ L +
Sbjct: 461 KRSRLVYIEKITNAACYQEYSAIVINGTALAI 492


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 430 NHSAFVSRHLNSSPDP 383
           +HS+ + R+LN+ PDP
Sbjct: 436 DHSSIIQRYLNAHPDP 451


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 28   QPSQWKQQLCWYLGLGCR 81
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 399 ILARIQELKDVTLAKPAG*PLWQPLSDPND 310
           I+ R  ++KD+ + +PA  P   P+  PND
Sbjct: 64  IVFRGSDVKDLRIEEPATTPSAPPVQPPND 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,289
Number of Sequences: 5004
Number of extensions: 19033
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)