Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14n04f
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z30423-13|CAE52904.1|   89|Caenorhabditis elegans Hypothetical p...    27   7.7  
AL032660-4|CAE52908.1|   89|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 434 FLEMQ*YFKNIH*FNYIKDKTIFTFSL 354
           FL+ Q YFKNIH  NY  D   F+ SL
Sbjct: 315 FLDAQVYFKNIH-ANYCLDGVSFSESL 340


>Z30423-13|CAE52904.1|   89|Caenorhabditis elegans Hypothetical
           protein T20G5.14 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 129 NALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELL 287
           N   D  HK  V   +G  ++ T     +   Y+K+VRP  Q  +   E+EL+
Sbjct: 26  NRRLDIAHKVIVRSILGFLVFSTSYCIINAGIYYKFVRPIRQEERELLERELI 78


>AL032660-4|CAE52908.1|   89|Caenorhabditis elegans Hypothetical
           protein T20G5.14 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 129 NALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELL 287
           N   D  HK  V   +G  ++ T     +   Y+K+VRP  Q  +   E+EL+
Sbjct: 26  NRRLDIAHKVIVRSILGFLVFSTSYCIINAGIYYKFVRPIRQEERELLERELI 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,958
Number of Sequences: 27780
Number of extensions: 263916
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)