Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14n03r
(772 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 5.5
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 7.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 7.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.6
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 198 LYTNILFFIFQYKKI 242
LY NIL + +YKK+
Sbjct: 423 LYQNILSYFLRYKKL 437
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 171 RVMRENLQRVFYNAEPIYRVIGGLLRL 91
+ +++ + +Y +PI VIGG + L
Sbjct: 942 QTVQDQIVSEYYQNKPISEVIGGAISL 968
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 191 RRRTLYYFFNLIVP 204
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 191 RRRTLYYFFNLIVP 204
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 191 RRRTLYYFFNLIVP 204
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 191 RRRTLYYFFNLIVP 204
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 191 RRRTLYYFFNLIVP 204
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 191 RRRTLYYFFNLIVP 204
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 259 RRRTLYYFFNLIVP 272
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 259 RRRTLYYFFNLIVP 272
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 66 QKNTLYFFTNAVIP 107
++ TLY+F N ++P
Sbjct: 228 RRRTLYYFFNLIVP 241
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 710 CDVIFATFIFNFLPVTYLSF 651
C +F I F+PV YL++
Sbjct: 503 CVGVFTFNIIKFVPVKYLTY 522
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 710 CDVIFATFIFNFLPVTYLSF 651
C +F I F+PV YL++
Sbjct: 556 CVGVFTFNIIKFVPVKYLTY 575
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,052
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -