Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14n03f
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0343 - 17748882-17753396 37 0.016
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 33 0.26
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 32 0.34
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 30 1.8
03_05_0202 + 21948955-21949057,21950191-21950285,21950414-21950689 30 1.8
01_06_1698 - 39264075-39264468,39264545-39264696,39264780-392648... 30 1.8
05_04_0179 + 18784011-18784240,18785035-18785119,18785905-187861... 29 2.4
11_04_0097 + 13448740-13450725 29 4.2
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 29 4.2
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 5.6
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 28 7.4
10_08_0025 - 14243249-14243377,14243935-14244174,14244266-142443... 28 7.4
01_06_1206 - 35408965-35409155,35409453-35409708,35409828-35410433 27 9.8
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 36.7 bits (81), Expect = 0.016
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 196 MNIFGAVLKNLTALVDYFGNKLNMLKRRTSKRFVLGESEEPKSFEDDEAEVIPSALVQKF 375
+N +GA + LT ++ +F N+L R+ LG +E+ ++ E+ + PSA K
Sbjct: 1105 INSYGASGRELTQVLSHFPKLSNLLIRKCQNVARLGVAEQ-RTITTPESSLSPSA--NKA 1161
Query: 376 QMTLNTDPEENEGD-ESRKNEERVDSRLLKPPNVGTLQPS 492
TL T ++ G+ E + D LL PP + + S
Sbjct: 1162 AKTLTTILQQQTGEAEEMETATADDGLLLLPPQIKVFEIS 1201
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 328 EDDEAEVIPSALVQKFQMTLNTDPEENEGDESRKNEERVDSR-LLKPPNVGTLQPSMSQG 504
E E EV+ + LV ++ L P+ E D + + +S L+ NV +PS S
Sbjct: 1535 EGSELEVMDTVLVSDAELRLMEPPQCEEIDAMKSTGDFSESHCLILEANVRN-EPSTSTD 1593
Query: 505 TVVHSQRFQEKDFTVATPEE 564
VV + Q++ F + P+E
Sbjct: 1594 DVVEAADLQDETFYIEEPKE 1613
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 559 EEFVRRFQGTKPINKVLIANNGIGAV 636
+EF + G PI+ VL+ANNG+ AV
Sbjct: 27 DEFCKALGGDSPIHSVLVANNGMAAV 52
>05_03_0359 -
12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 475 GTLQPSMSQGTVVHSQRFQEKDFTVATPEEFVRRFQGTKPINKVLIANNGIGA 633
G P Q + ++ + +V+ EF G PI+ VL+ANNG+ A
Sbjct: 182 GPTVPGSYQMNGIINETHNGRHASVSKVVEFCTALGGKTPIHSVLVANNGMAA 234
>03_05_0202 + 21948955-21949057,21950191-21950285,21950414-21950689
Length = 157
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +1
Query: 307 SEEPKSFEDDEAEVIPSALVQKFQMTLNTDPEENEGDESRKNEERVDSRLLKPPNVGTLQ 486
+EE + D + VIP+ Q+ +T +T P+ + + ++ EE++ L P Q
Sbjct: 27 TEEEEDEWDADGFVIPNLTTQEDDVTEHTAPKPKDPEPLKEKEEKI---YLGPHGAPPSQ 83
Query: 487 PSMSQGTVV-HSQRFQEKDFTVATPEEFVRRFQGTKPINKVLIANNGIGA 633
+ +V QRF+ K +E +F G NKV +GA
Sbjct: 84 AKQQEINIVGRKQRFRNK------LKEADNKFTGNAQENKVETLRELMGA 127
>01_06_1698 -
39264075-39264468,39264545-39264696,39264780-39264830,
39264946-39265122,39265256-39265348,39265489-39265555,
39265695-39265768,39266007-39266088,39266182-39266255,
39266354-39266383,39266475-39266534,39267524-39268225
Length = 651
Score = 29.9 bits (64), Expect = 1.8
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 229 TALVDYFGNKLNMLKRRTSKRFVLGESEE-PKSFEDDEAEVIPSALVQKFQMTLNTDPEE 405
TA + G + L RR +R + S P D+ VIPS LV+ NT+PE+
Sbjct: 7 TATFPHLGLRPKPLLRRRLRRIAVSVSPSGPDETPADDPPVIPSILVK------NTEPED 60
Query: 406 NEGDESRKNEERVDSRLLKPPNVGTLQPSMSQGTVVHSQRFQEKD-FTVATP 558
S + P V + S+++G V Q + ++ F + TP
Sbjct: 61 VARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVPLQTPESQEAFRMLTP 112
>05_04_0179 +
18784011-18784240,18785035-18785119,18785905-18786102,
18786347-18786527,18787026-18787315,18787583-18787771,
18788316-18788792
Length = 549
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 520 QRFQEKDFTVATPEEFVRRFQGTKPINKVLIANNGIGAVNA 642
QR QE+DF VA P+E + PI+K N A NA
Sbjct: 479 QRQQEEDFPVARPKEKGKENAADAPISKENGDKNAADAANA 519
>11_04_0097 + 13448740-13450725
Length = 661
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 277 RTSKRFVLGESEEPKSFEDDEAEVIPSALVQKFQMTLNTDPEENEGDESRKN 432
R + VLG +E ++ DD + A V + N EENEGD+ +K+
Sbjct: 607 RAAIEAVLGRKKEGEN--DDSTVNVEEAQVVESHSDTNDITEENEGDDQKKS 656
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 292 FVLGESEEPKSFEDDEAEVIPSALVQKFQMTLNTDPEENEGDESRKNEERVDSRLLKPP 468
F +G++ P +DE E + A+ + + +D E + + +NE + ++L PP
Sbjct: 344 FFVGKTPVPVVATEDEDEELARAVAASLEESKGSDTSEEKIEPEVENEPSLSAKLNYPP 402
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1
Query: 271 KRRTSKRFVLGESEEPKSFEDDEAEVIPSALVQKFQMTLNTDPEENEGD 417
+RRT++ ESEE DD E + K Q L DPEE EG+
Sbjct: 353 RRRTARNISYAESEE----SDDSEEKLA-----KQQKVLKEDPEEEEGE 392
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 304 ESEEPKSFEDDEAEVIPSALVQKFQMTLNTDPEENEGDESRKNE-ERVD 447
+SEE F+DDE E + ++ ++ + EE E DE E E VD
Sbjct: 18 KSEECLEFDDDEEEEVEEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVD 66
>10_08_0025 -
14243249-14243377,14243935-14244174,14244266-14244360,
14245120-14245198,14249528-14250202,14250288-14250338,
14250439-14250813
Length = 547
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +1
Query: 292 FVLGESEEPKSFEDDEAEVIPSALVQKFQMTL-NTDPEENEGDE 420
++LGE+ E KSFE+ E++P + +++ + + DP+++E +E
Sbjct: 369 WMLGENGEEKSFENPN-ELLPLSRLEEIGVLYWHLDPKKSESEE 411
>01_06_1206 - 35408965-35409155,35409453-35409708,35409828-35410433
Length = 350
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 373 FQMTLNTDPEENEGDESRKNEERVDSRLLKPPNVGTLQPSMSQGTVVHSQRFQ 531
FQ+TL+ DP+ DE ++ + +S+L K + LQ S+ +V+ +Q
Sbjct: 225 FQITLSGDPDRACVDEQNRDAQAYNSKLEK--LLPALQGSLHGSKIVYLDAYQ 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,662
Number of Sequences: 37544
Number of extensions: 271618
Number of successful extensions: 723
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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