Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14n03f
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   7.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 471 CWNSAAVYVPRNSG 512
           CW++   Y+P+N G
Sbjct: 459 CWDTRKEYIPQNLG 472


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 471 CWNSAAVYVPRN 506
           CWNS   Y P N
Sbjct: 340 CWNSLLPYSPEN 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 462  AP*CWNSAAVYVPRNSGAQSAFPRKGFYSCHSRRVCETVPG 584
            AP  ++   V VP+      + P+      H+ R   TVPG
Sbjct: 1268 APPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAYRDAVTVPG 1308


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 217 LKNLTALVDYFGNKLNMLKRRTSKRFVLGESEEPKSFE 330
           LKN+   +  F   L+ +   + + F  G +E+PK  E
Sbjct: 5   LKNIMKPLMEFSATLDTVVPNSGELFKAGSAEQPKEQE 42


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -3

Query: 639 IYSTNTVISYQYFIYXLRTLEPSHKLFWSGNCKILFL 529
           I+    +     F Y +    P  K  + GN  I+FL
Sbjct: 101 IFPKGELFDATVFTYNITNSTPLLKKLYGGNSTIIFL 137


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 316 PKSFEDDEAEVIPSALVQKFQMTLNTDPEENEGDESRKNEERVDSR 453
           P++   + A    S L +K ++   TDP E+ GD     E  + SR
Sbjct: 99  PEAVSYNVAVPTKSILEKKPELVDATDPGEHNGDTVTDVEAGLASR 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,660
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)