Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m24f
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    31   0.054
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   2.7  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   4.7  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    24   6.2  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    24   6.2  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    24   6.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.2  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    24   8.2  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 31.1 bits (67), Expect = 0.054
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -3

Query: 137 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 33
           I   +MR ELG   T RC   D QA    K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 189 ERISRSQQFTDFIEQV*DHDVKDA 118
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 113 ELGSKSTSRCGTADTQ 66
           EL  KST  CGT D Q
Sbjct: 53  ELNPKSTDNCGTVDFQ 68


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 347 ILREHN-LFLIHKYRSSNLQ*SVDDELGDVLQNTADLGSDAPGGLQ 213
           +LR+ N LF+ H  +S        D  GD+    AD+    PG L+
Sbjct: 407 VLRQVNELFIDHNIKSQ-----FSDSRGDIAYLVADISDCTPGSLE 447


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 187 LRRDGYAGSWSPPGASEPRSAVFW 258
           +R   Y G WSPP    P     W
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEW 363


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 216 PGASVAVTAERISRSQQFTDFIEQV*DHDVKDALRIRLEIDIA 88
           P A   V  +RI   +++ DF+E +     +D   I  E+D+A
Sbjct: 32  PTACDDVFCKRIESEKKYNDFLESLFKKYGRDTSDIADEVDLA 74


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 SAVTATLAPGALRVHQSRGQPCSGVRRPT 274
           S+++  LAP  LR H+++      ++RP+
Sbjct: 348 SSLSRKLAPPFLRTHKAKSNSLFSMKRPS 376


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 242 GQPCSGVRRPTRHQQITVNYSN 307
           G PCSG+    + +Q+T+++ +
Sbjct: 318 GGPCSGILNKNQCEQVTMDFDS 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,397,762
Number of Sequences: 5004
Number of extensions: 25138
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)