Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m24f
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   2.3  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   2.3  
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    27   3.9  
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical...    26   6.9  
AL032631-6|CAA21574.1|  234|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF024494-8|ABQ13073.1|  256|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 55   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 55   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 284 VDDELGDVLQNTADLGSDAPGGLQE 210
           ++DE+ D+L+N AD+ +D    +QE
Sbjct: 759 IEDEVKDILKNVADITADMAPVIQE 783


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 284 VDDELGDVLQNTADLGSDAPGGLQE 210
           ++DE+ D+L+N AD+ +D    +QE
Sbjct: 759 IEDEVKDILKNVADITADMAPVIQE 783


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 SEPRSAVFWSTSPNSSSTDYCKLL 303
           S+PR +  W+T+P     DYC +L
Sbjct: 525 SKPRKST-WTTTPEPKQDDYCDIL 547


>AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical
           protein C09G12.9 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 278 HQQITVNYSND-TCESKINYVLLKLLKKK 361
           H+QI +NY+ D TC+  I Y L + LKK+
Sbjct: 362 HRQIVLNYAKDLTCDDVI-YSLGQSLKKR 389


>AL032631-6|CAA21574.1|  234|Caenorhabditis elegans Hypothetical
           protein Y106G6H.4 protein.
          Length = 234

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +1

Query: 16  ERIQSTMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLFNEIGELL 171
           E +Q  M+    ++  A   A+ HR   ++   +++      NLF E+ E++
Sbjct: 36  EEVQYMMRQVTDSVRFAMCEAIAHRPGLWDSTREKVSSAARKNLFAEVVEVI 87


>AF024494-8|ABQ13073.1|  256|Caenorhabditis elegans Hypothetical
           protein C38C3.3 protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 184 PLRRDGYAGSWSPPGASEPRSAVFWSTSP 270
           P +RD Y  +W    A +P++   W   P
Sbjct: 22  PKKRDVYVTNWDRAAAEQPKALSTWIYQP 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,887,564
Number of Sequences: 27780
Number of extensions: 148695
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)