Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m23f
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    36   0.005
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    34   0.019
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    33   0.043
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    28   1.2  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    28   1.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   3.7  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   8.6  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +3

Query: 342 TPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNPGKSVTV----SVKEIADLKDEIINS 509
           +PY     D  D   P  CE   V  L RHG+RNP   VT     S + + + +++++N 
Sbjct: 40  SPYHEPYFDGLDSAFPETCEIQQVHLLQRHGSRNPTGDVTATDVYSSQYLNNFQEKLLNG 99

Query: 510 YNAGNSQLCAQDIEEFKKWT 569
               N       +   K+WT
Sbjct: 100 SIPVNFSYPENPLCFIKQWT 119


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 333 SSKTPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNP-GKSVTVSVKEIADLKDEIIN 506
           +S++PY            P  C+   V TL RHG+RNP G +       IA+ +  ++N
Sbjct: 37  TSRSPYHKPYFYGPSIDFPTTCKIKQVHTLQRHGSRNPTGGNAAFDAVGIANFQQRLLN 95


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 330 YSSKTPYDTVRGDLRDY-QVPNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADLKDEIIN 506
           Y  K  + T R  L+ Y  +P+ CE +S   +N    R    S++V+ KEI  LKD I++
Sbjct: 395 YGLKPTHVTYRSLLKAYCLLPSTCEQISQAWVNLE-YRLEAISISVADKEINLLKDCILS 453

Query: 507 SYNAGNSQLCAQ 542
             +  + Q C Q
Sbjct: 454 QPDRDDQQSCLQ 465


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 387 PNNCEAVSVWTLNRHGNRNP---GKSVTVSVKEIADL-KDEIINSYNAGNSQLCAQDIEE 554
           P +C    V  L RHG+RNP     +  VS  +  D+ +++++N     N       +  
Sbjct: 55  PESCAIKQVHLLQRHGSRNPTGDDTATDVSSAQYIDIFQNKLLNGSIPVNFSYPENPLYF 114

Query: 555 FKKWT 569
            K WT
Sbjct: 115 VKHWT 119


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = +3

Query: 387 PNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADLKD--EIINSYNAGNSQL-CAQDIEEF 557
           P+N  A++ WT N       G    +    I D+KD   ++ SY   N  L  A+  E+ 
Sbjct: 288 PDNAIAMAPWTGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347

Query: 558 KK---WTWNETLEVSQSFLTG 611
           +      WNE  +   SFL G
Sbjct: 348 RTKLIEDWNEKKKKGSSFLFG 368


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +3

Query: 444  PGKSVTVSVKEI-ADLKDEIINSYNAGNSQLCAQDI---EEFKKWTWNETLEVSQ 596
            P  S  +S+ EI  + K+EI +     + +   ++I   EEF+KW   E+L V +
Sbjct: 1229 PKNSQPLSISEIMTEQKEEIESQKRRSSFRKTIEEIQQEEEFQKWWEEESLRVQK 1283


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 321 TDIQSSNSTLDSRWQHSTT 265
           +D Q  +S + +RWQHS+T
Sbjct: 303 SDEQEVSSMMGNRWQHSST 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,771
Number of Sequences: 5004
Number of extensions: 35274
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)