Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m22f
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   1.5  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    27   1.5  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    27   2.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   3.5  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.5  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    26   3.5  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   4.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   6.2  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   6.2  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.1  

>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 415 GYMVVALTVTLV-----VFPLSAYLAILERRFLLPSVPPRGHGFVLLVFWAMIFVSE 570
           G MV A  VT       VFP S YLAI+++R   P+V    +  V ++   +IF  E
Sbjct: 348 GCMVAASRVTYSYARDGVFPFSKYLAIVDKRTKTPNVCVWMNVVVGILCCLLIFAGE 404


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 424 VVALTVTLVVFPLSAYLAILERRFLLPSVPP 516
           V + T T+ +F L    + LER+ LLPS PP
Sbjct: 250 VTSSTQTVHIFRLKEVYSNLERQGLLPSSPP 280


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
          S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 63 KRRECNKKYYGINRSKYIKCI 1
          KRR C +  +G   +K+++CI
Sbjct: 4  KRRNCGRNKHGRGHTKFVRCI 24


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 403  GCVYGYMVVALTVTLVVFPLSAYLAILERRFLLPSVPPRGHGFVL 537
            G ++GY+  ALT+T ++   S +L   E R  + S   +G G VL
Sbjct: 1041 GSIFGYLEPALTITAILSTKSPFLGDDEAR-EIRSKQSQGWGDVL 1084


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 380 NRNLITANTGTKRVKNI*TPKSFDDRTS 297
           NRN++ + + TK ++ + TP+ F +R S
Sbjct: 704 NRNVVVSESLTKSMEEVLTPEKFYERLS 731


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 199 FMETVSAVFIGGFLLVLGTTQIVIYKRHATE 291
           F+E    +++GGF L +    ++   +HA E
Sbjct: 150 FVEEAKVIYVGGFHLTVSPESMLCLAQHANE 180


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 243 GLGNHTNCYLQKTCH*GDGCPIIEAF-WSSDVFYS 344
           G+ N       K CH  DGC ++E F W  +   S
Sbjct: 301 GIKNDAELKGMKECHIRDGCALVEYFAWLDEYLNS 335


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 429 NYHITIHTTTFEQ 391
           NYHITIH +++E+
Sbjct: 382 NYHITIHVSSYER 394


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 343 LLVPVLAVIRFLLQALLFKSGCVYGYMVVALTVTLVVFPLSA 468
           +L+  L  + +LL A LF++  V+   V+  +     FPL A
Sbjct: 492 ILLIFLQCLNYLLDAYLFRAASVFAANVIMRSAVAGGFPLFA 533


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 215 LLCS*VDSYWSWEPHKLLFTKDM 283
           LL S +D  W+W  H L F + M
Sbjct: 636 LLLSHLDKGWTWNKHSLGFMRKM 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,576
Number of Sequences: 5004
Number of extensions: 58608
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)