Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m22f
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0639 + 23873735-23873814,23873932-23874148,23874259-238744...    31   0.51 
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615...    31   0.89 
10_01_0233 + 2471628-2471898,2474289-2475101,2475468-2475655           28   4.8  
12_02_0106 + 13654686-13655789                                         28   6.3  
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310...    28   6.3  
01_06_1402 + 37052996-37053449,37053533-37053630,37053718-370538...    27   8.3  

>01_05_0639 +
           23873735-23873814,23873932-23874148,23874259-23874420,
           23876037-23876357
          Length = 259

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 169 IWVDHGISQCFMETVSAVFIGGFLLVLGTTQIVIYKRHATEVMDVRSSKLFGVQMFFTLL 348
           +WV +GI      ++  V I G  L++  T ++I+  ++     +R   + GV++ F L 
Sbjct: 56  LWVFYGIPVVHPNSILVVTINGIGLLVEGTYLLIFFLYSPNKKRLRMCAVLGVELVFMLA 115

Query: 349 VPVLAVI 369
           V +L V+
Sbjct: 116 V-ILGVL 121


>01_05_0637 +
           23860857-23860936,23861057-23861273,23861388-23861549,
           23862850-23863155
          Length = 254

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 169 IWVDHGISQCFMETVSAVFIGGFLLVLGTTQIVIYKRHATEVMDVRSSKLFGVQMFFTLL 348
           +WV +GI      ++  V I G  L++  T + I+  ++     +R   + GV++ F L 
Sbjct: 56  LWVFYGIPIVHPNSILVVTINGIGLIVEGTYLFIFFLYSPNKKRLRMLAVLGVELVFMLA 115

Query: 349 VPVLAVI 369
           V +L V+
Sbjct: 116 V-ILGVL 121


>10_01_0233 + 2471628-2471898,2474289-2475101,2475468-2475655
          Length = 423

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +1

Query: 265 VIYKRHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSG--CVYGYMVVALT 438
           ++Y R   + +   ++KL GV++    L  +LA +    QAL FK+G     GY+ +A +
Sbjct: 320 LLYNRKLGQEIGRLNAKLAGVKIVLVDLYNILADVMHRYQALGFKNGKDACCGYIGLAAS 379

Query: 439 V 441
           V
Sbjct: 380 V 380


>12_02_0106 + 13654686-13655789
          Length = 367

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 124 VIMMKYCPPNVTLGEIWVDHGISQCFMETVSAVFIGGFLLVLGTT 258
           +  + Y PP V LG    D  +    +  + A  + G  L++GTT
Sbjct: 229 IAALAYRPPEVILGSTTYDETVDSWGLGCIMAELLAGERLLVGTT 273


>06_01_0437 +
           3101449-3101521,3101872-3102232,3103766-3103958,
           3104051-3104848,3104997-3105143,3106024-3106377
          Length = 641

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 333 VFYSFSTSVGCNKVSVTSIIVQKWLCVWL 419
           V Y   + +   + + TS++  KW C+WL
Sbjct: 212 VVYKILSKLPLKEAAKTSVLSTKWRCIWL 240


>01_06_1402 +
           37052996-37053449,37053533-37053630,37053718-37053888,
           37054017-37054117,37054928-37055063,37055155-37055205,
           37055311-37055598,37055896-37056130,37056408-37056523,
           37057300-37057496,37057739-37057745
          Length = 617

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 232 GFLLVLGTTQIVIYKRHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCV 411
           G  + +G  Q++I    A   + +R  KLFG ++F    VP+   I + +  +L  +G V
Sbjct: 302 GSCIEMGLLQLLIVVMFA---LYLRKVKLFGYRVFLIYAVPLALGITWAIAFVLTATG-V 357

Query: 412 YGY 420
           Y Y
Sbjct: 358 YSY 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,135
Number of Sequences: 37544
Number of extensions: 376106
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)