Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m22f
         (586 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065817-1|BAC06036.1|  312|Homo sapiens seven transmembrane hel...    31   4.0  
AF308473-1|AAG33618.1|  283|Homo sapiens ATP-binding cassette ha...    30   5.2  
AF308472-1|AAG33617.1|  896|Homo sapiens ATP-binding cassette ha...    30   5.2  
AB209054-1|BAD92291.1|  398|Homo sapiens ATP-binding cassette, s...    30   5.2  

>AB065817-1|BAC06036.1|  312|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 397 KSGCVYGYMVVALTVTLVVFPLSAYLAILERRFLLPSVPPRGHGF 531
           K   +YG MV++  +  V+   S+Y+ IL   F LPS   R   F
Sbjct: 195 KINIIYGLMVISYIIVDVILIASSYVLILRAVFRLPSQDVRLKAF 239


>AF308473-1|AAG33618.1|  283|Homo sapiens ATP-binding cassette
           half-transporter protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 KPRVIMM---KYCPPNVTLGEIWVDHGISQCFMETVSAVFIGGFLLVLGTTQIVI 270
           +PR+ M+    YC     +G  W+  G+S CF  T+    +    + LGT  +V+
Sbjct: 50  RPRIAMVTVGNYCEAEGPVGPAWMQDGLSPCFFFTL----VPSTRMALGTLALVL 100


>AF308472-1|AAG33617.1|  896|Homo sapiens ATP-binding cassette
           half-transporter protein.
          Length = 896

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 KPRVIMM---KYCPPNVTLGEIWVDHGISQCFMETVSAVFIGGFLLVLGTTQIVI 270
           +PR+ M+    YC     +G  W+  G+S CF  T+    +    + LGT  +V+
Sbjct: 50  RPRIAMVTVGNYCEAEGPVGPAWMQDGLSPCFFFTL----VPSTRMALGTLALVL 100


>AB209054-1|BAD92291.1|  398|Homo sapiens ATP-binding cassette,
           sub-family B, member 6 variant protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 KPRVIMM---KYCPPNVTLGEIWVDHGISQCFMETVSAVFIGGFLLVLGTTQIVI 270
           +PR+ M+    YC     +G  W+  G+S CF  T+    +    + LGT  +V+
Sbjct: 49  RPRIAMVTVGNYCEAEGPVGPAWMQDGLSPCFFFTL----VPSTRMALGTLALVL 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,272,910
Number of Sequences: 237096
Number of extensions: 2145275
Number of successful extensions: 3803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)