Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m22f
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    27   9.8  
U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
 Frame = -3

Query: 494 NLLSRIAK*ADNGNTTRVTV-----NATTI*PYTQPLLNNNACNRNLITANTG---TKRV 339
           N+L R+    DN + T+ TV     NA T  P T P         N+IT+  G   T   
Sbjct: 41  NILHRLPDTPDNSDNTKTTVSYLTTNAVTSNPITSPY--EFTTEENVITSTAGSMSTSES 98

Query: 338 KNI*TPKSFDDRTSITSVACLL*ITICVVPKT 243
            +  +  + D +    S    + +T  V+P T
Sbjct: 99  DSSSSSSAEDHKDGENSTLVQVTVTTTVIPST 130


>Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical
           protein T26H8.4 protein.
          Length = 561

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 202 METVSAVFIGGFLLVLGTTQIVI--YKRHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRF 375
           M+T+S +   GF+LVLG  Q++   Y   +  +   +S+ +  + +F  ++  V   I F
Sbjct: 381 MDTLSTLK-SGFMLVLGGVQLIFVKYPHGSWTISFSKSTVILQMSIFVAIVSSVAHFISF 439

Query: 376 LLQ 384
           L +
Sbjct: 440 LFE 442


>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 322 GVQMFFTLLVPVLAVIRFLLQALLFKSGCV---YGYMVVALTVTLVVFPLSAYLA 477
           G  + FT L     V  FL+   LF   C+   Y YM+V      ++F L+ +++
Sbjct: 5   GQLIVFTGLFTAFFVNSFLIYLTLFYITCIRGIYKYMIVWFAFGCIIFDLTEFIS 59


>U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical
           protein F20D6.2 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 147 RTILHHDYSWLNTAIH-FASAISHMPANSKRRECNKKYY 34
           +  + H + ++N+ IH +   I     N + REC K+Y+
Sbjct: 244 KNFVTHQWIFINSEIHPYFKHIRLFMVNGRNRECLKRYF 282


>U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical
           protein T28D9.4 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 337 FTLLVPVLAVIRFLLQALLFKSGCVYGYMVVALTVTLVVFP 459
           FT++  ++AV RF+   +LFK   +Y     +LT T+++ P
Sbjct: 386 FTVMFTIIAVFRFVFIIILFKV-LIYKNPPHSLTTTVLLKP 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,207
Number of Sequences: 27780
Number of extensions: 334577
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)