Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m22f
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.55 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.55 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.72 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
 Frame = +1

Query: 208 TVSAVFIGGFLLVLGTTQIVIYKRHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQA 387
           T+  + I   ++VLG   +++   H +++ +V  + +F V +    L+  LAV+ F    
Sbjct: 68  TLIVLAIVNVMVVLGNVLVILAVYHTSKLRNV--TNMFIVSLAVADLMVGLAVLPFSATW 125

Query: 388 LLFKSGCVYG------------YMVVALTVTLVVFPLSAYLAILERRFLLPSVPPRGHGF 531
            +FK   ++G            +M  A  + L    L  YLA+         + PR    
Sbjct: 126 EVFKVW-IFGDLWCSIWLAVDVWMCTASILNLCAISLDRYLAVTRPVSYPQIMSPRRARL 184

Query: 532 VLLVFWAMIFV 564
           ++   W + FV
Sbjct: 185 LVATVWILSFV 195



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 111 TAIHFASAISHMPANSKRRECNKKYYGINR 22
           T++H+++  +H       R  + K  GINR
Sbjct: 368 TSVHYSNGQTHSQLCPTPRSTHLKVSGINR 397


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 316 LFGVQMFFTLLVPVLAVIR--FLLQALLFKSGCVYGYMVVALTVTLVVFPLSAYLAILER 489
           LF V   F   + +LAV+R  +L  A  +    V         V LVV P SA   +LE 
Sbjct: 54  LFSVATVFGNTLVILAVVRERYLHTATNY---FVTSLAFADCLVGLVVMPFSAIYEVLEN 110

Query: 490 RFL 498
           R+L
Sbjct: 111 RWL 113


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 327 SDVFYSFSTSVGCNKVSVTSIIVQKWLCVWLYGS 428
           S + Y   TS+     S  +I+++K   +W Y S
Sbjct: 290 SQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDS 323


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 233 DSYWSWEPHKLLFTKDMPLR*WM 301
           ++Y+ W P K++  K +P   W+
Sbjct: 143 NNYYIWHPGKIVNGKRVPPTNWV 165


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 494 SYYRPCLLEVTVLYSWFFGL 553
           S+Y PC++ V + Y+ F  L
Sbjct: 351 SFYIPCIIMVFLYYNIFKAL 370


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 233 DSYWSWEPHKLLFTKDMPLR*WM 301
           ++Y+ W P K++  K +P   W+
Sbjct: 143 NNYYIWHPGKIVNGKRVPPTNWV 165


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/36 (19%), Positives = 19/36 (52%)
 Frame = +3

Query: 141 LSSKCDTWRDMGGSRHITMFHGDRICCVHRWIPIGL 248
           L+S+ ++W +    R+ T+F+ +       ++P  +
Sbjct: 268 LASRVESWVNTSVIRNYTLFNENSEAAARSFVPFSI 303


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 462 QWKYYQSNC*CNYHITIHTTTF 397
           +W  YQSN    +H  + T  F
Sbjct: 14  RWNNYQSNMTSVFHQLLQTEAF 35


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 288 SGMSFVNNNLCGS 250
           S M F+NN++C S
Sbjct: 624 SNMGFLNNSMCTS 636


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,278
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)