Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m20f
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    38   0.006
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148...    38   0.006
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704...    32   0.30 
03_05_0380 + 23636675-23636845,23637646-23637678,23637794-23638132     31   0.93 
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423...    28   5.0  
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    27   8.7  

>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 543 SALACGHYFCNDCWAMHF 596
           S + CGH FCNDCW  HF
Sbjct: 213 STMDCGHCFCNDCWTEHF 230


>03_05_0377 +
           23613181-23613342,23614469-23614501,23614606-23614879,
           23615105-23615585,23616174-23616846
          Length = 540

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 543 SALACGHYFCNDCWAMHF 596
           S + CGH FCNDCW  HF
Sbjct: 145 STMDCGHCFCNDCWTEHF 162


>03_02_0275 +
           7042433-7042732,7042864-7043140,7043751-7044231,
           7044943-7045491,7045556-7045680,7045824-7045966
          Length = 624

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 543 SALACGHYFCNDCWAMHFEV 602
           S + CGH +CN+CW  +F V
Sbjct: 181 SKMDCGHNYCNECWTGYFIV 200


>03_05_0380 + 23636675-23636845,23637646-23637678,23637794-23638132
          Length = 180

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 531 LHKYSALACGHYFCNDC 581
           L   SA+ CGH FCNDC
Sbjct: 156 LGSVSAMDCGHCFCNDC 172


>08_02_1429 +
           27040293-27040523,27041618-27041739,27042290-27042392,
           27042530-27042620,27042851-27043023,27043379-27043467,
           27044212-27044319,27044408-27044498,27044708-27044797,
           27045587-27045658,27045756-27045849,27045940-27046087,
           27046961-27047222
          Length = 557

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/73 (19%), Positives = 28/73 (38%)
 Frame = +3

Query: 366 AKVALHAYEWNAQEIINKYKENANEVLVFSRVKXXXXXXXXXXXXXXXXXXXTPQLHKYS 545
           A V LH Y+WN  ++ +++  +  +V     +                           S
Sbjct: 109 ACVLLHHYKWNISKLSDEWFADEEKVRDIVGLLLNGIDLPNSRKLTCGICFEGYSSDVMS 168

Query: 546 ALACGHYFCNDCW 584
           +  C H++C++CW
Sbjct: 169 SADCDHFYCHECW 181


>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 543 SALACGHYFCNDCW 584
           S   C H++C++CW
Sbjct: 147 SCAGCSHFYCHECW 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,287
Number of Sequences: 37544
Number of extensions: 193444
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)