Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m17f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   2.8  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   6.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   8.5  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 491 CRVLSEKSLKLNNFAPFDIIHLVLVKQKNINLFQI 387
           C V+ E      N+A  +++HL+ +  KN  +  +
Sbjct: 192 CLVIDEAHRSTGNYAYVEVVHLLSLSNKNFRILAL 226


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 485 RDIYLCI*RSALFGISINDPXFLIDLQ 565
           R +Y  +  S+L GIS++DP F   LQ
Sbjct: 157 RSVYAAVCVSSLVGISMDDPLFEGTLQ 183


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +3

Query: 81  SVMPK*LLHADGVASKSSYSSARVYKTNNI*TATSNLISKSKHISHLTNNYKKNCIFSYS 260
           S +P   L+AD V +  S+++  V+ T+N    T++   +      L + Y++ C  S  
Sbjct: 259 SAIPLRFLYADDVYNSDSFANVSVHPTDNSFFLTTSSSGRWTIWQFLDDGYRE-CFGSSF 317

Query: 261 VQC*QQNCKSDSIASTIY 314
            +  QQ   S   +S  Y
Sbjct: 318 KESLQQALCSAPTSSIAY 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,386
Number of Sequences: 5004
Number of extensions: 40254
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)