Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m17f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024840-2|AAX55682.1|  434|Caenorhabditis elegans Hypothetical ...    31   0.48 
AC024840-1|AAF59619.2|  427|Caenorhabditis elegans Hypothetical ...    31   0.48 
AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>AC024840-2|AAX55682.1|  434|Caenorhabditis elegans Hypothetical
           protein Y59H11AL.1b protein.
          Length = 434

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 123 SKSSYSSARVYKTNNI*TATSNLISKSKHISHLTNNYKKNCIFSYSVQC 269
           S+ + +++ +   N   T  +  + +  HI HLT + K  CI  YS+ C
Sbjct: 13  SRITTTASEIMMRNEPTTTENPAVQEMNHIYHLTPSMKMLCILFYSILC 61


>AC024840-1|AAF59619.2|  427|Caenorhabditis elegans Hypothetical
           protein Y59H11AL.1a protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 123 SKSSYSSARVYKTNNI*TATSNLISKSKHISHLTNNYKKNCIFSYSVQC 269
           S+ + +++ +   N   T  +  + +  HI HLT + K  CI  YS+ C
Sbjct: 13  SRITTTASEIMMRNEPTTTENPAVQEMNHIYHLTPSMKMLCILFYSILC 61


>AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical
           protein Y116A8C.4 protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 431 HLVLVKQKNINLFQIFHKFKTSLLANAYIHER 336
           +LV + Q+N  LFQI  K++  LL +A  H R
Sbjct: 206 NLVKLGQRNFGLFQISFKYRDQLLISAEEHRR 237


>Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical
           protein F11C3.1 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 157 KQIIFKLLLQT*SVKANISLISLITIKKTVFSHTQFSVDNKIAK 288
           K ++F+  L T  +++++SL S+    + +++   FSVD+K  K
Sbjct: 297 KDLVFEAKLNTRIIRSDLSLHSMTLSFEFLYARLSFSVDSKHEK 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,661,876
Number of Sequences: 27780
Number of extensions: 210113
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)