Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m13r
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 202 NYLCLSFILIFKVLYLIWYSS 140
           NY+     +I ++LYL WYSS
Sbjct: 796 NYVGSEDSVIPRILYLTWYSS 816


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/23 (30%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 364 RQKC-FYANLEIDKLLFLYNLKY 299
           +++C +Y NL + ++ ++YN +Y
Sbjct: 39  KEECDYYQNLNLGEIYYIYNPRY 61


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 513 FKLHFYSDNM*TVGRTISYNNECKK 587
           +K ++ ++N        +YNN CKK
Sbjct: 329 YKYNYNNNNYNNNNYNNNYNNNCKK 353


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 587 FFTFIIVRNCPPNCLH 540
           FFT  +VR    NC+H
Sbjct: 25  FFTMYLVRAFCRNCIH 40


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 587 FFTFIIVRNCPPNCLH 540
           FFT  +VR    NC+H
Sbjct: 473 FFTMYLVRAFCRNCIH 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,631
Number of Sequences: 438
Number of extensions: 3410
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)