Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m13f
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.95 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   3.8  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   6.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.8  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    25   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 450  SVMVQTDNQHGSHRVKNTTTQYTNELFHTQ 361
            +V  +T N HG   V  TT+ Y NE F ++
Sbjct: 2065 AVTTKTTNVHGDEMVVTTTSAYENEKFSSK 2094


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 300 CFYN*KSCHY*YESQVNNV--NFVCEIIRS 383
           CFYN K  HY  E++V +V  + V E+I++
Sbjct: 61  CFYNHKKPHYSVETEVKDVIISKVVELIKT 90


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 377 SFVYCVVVFFTL 412
           SF+YCV+ FFT+
Sbjct: 149 SFIYCVMAFFTI 160


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 414  HRVKNTTTQYTNEL---FHTQNSRCSLGTRINND 322
            HR+KNT ++ T+ L   +H+Q      GT + N+
Sbjct: 999  HRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNN 1032


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 405 KNTTTQYTNELFHTQNSRCS-LGTRINNDNFFN 310
           +N   QYT EL H + S    L T+++N N  N
Sbjct: 118 ENDANQYTLELLHAKESELKLLKTQLSNLNHCN 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,929
Number of Sequences: 5004
Number of extensions: 54272
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)