Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m13f
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical ...    28   6.2  
AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical
           protein F54H5.3 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 459 VDLSVMVQTDNQHGSHRVKNTTTQYTNELFHTQNSRCSLGTRINND 322
           VDL    Q  N+  S RVK    QY+N + H ++ R  LG   NN+
Sbjct: 229 VDLDRQAQLVNEL-SERVKRGEIQYSNLVMHERSLRVELGRLKNNE 273


>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 403 FYSVRAMLIIGLHHNTQVHSVMNYLSN 483
           FYSV  +LIIG+  +  +H + N  +N
Sbjct: 5   FYSVTVLLIIGIDSDPTIHDIANDSAN 31


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 74  LCGLEKR--KIASHIHVLNVLLATG-ISYLLK*VFISVYALIEMVLLTYFV 217
           +CG+      I  H H L  L   G +SY LK +F S+Y L   +L+  F+
Sbjct: 180 ICGIVHMISNIFCHAHSLYYLNPYGRLSYYLKILFTSLYVLSTPILIASFI 230


>AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.2 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 400 VFYSVRAMLIIGLHHNTQVHSVMNYLSNNLIL 495
           +FY +R ML++GL+   +   + +Y S +LIL
Sbjct: 65  IFYEIRKMLLLGLNIEIETLFLEDYKSFSLIL 96


>AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.6 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 400 VFYSVRAMLIIGLHHNTQVHSVMNYLSNNLIL 495
           +FY +R ML++GL+   +   + +Y S +LIL
Sbjct: 65  IFYEIRKMLLLGLNIEIETLFLEDYKSFSLIL 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,829
Number of Sequences: 27780
Number of extensions: 302231
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)