Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m13f
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   5.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   5.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 312 NCKNTYHTISELS 274
           NC NTY  IS+LS
Sbjct: 183 NCDNTYAYISDLS 195


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -3

Query: 408 VKNTTTQYTNELFHTQNSRCSLGTRINNDNFFNCKNTYHTI 286
           + N T    N   +  N+        NN+   NCK  Y+ I
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNI 358


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 273 NLIQISCDKCFYN*KSCH 326
           N+ Q  C  C Y  K CH
Sbjct: 41  NVYQYRCANCTYATKYCH 58


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 465 NELFIKQPYSWHNDIPLPVG 524
           NE++ K PY +++  PL  G
Sbjct: 20  NEMYPKDPYLYYDFYPLERG 39


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 465 NELFIKQPYSWHNDIPLPVG 524
           NE++ K PY +++  PL  G
Sbjct: 35  NEMYPKDPYLYYDFYPLERG 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,902
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)