Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14m12r
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    52   6e-09
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 52.0 bits (119), Expect = 6e-09
 Identities = 44/217 (20%), Positives = 93/217 (42%), Gaps = 6/217 (2%)
 Frame = -1

Query: 760 FNVVLWLXGVSVFALCLWICFEPGFNEWMRILELQKYFIGIYIMLIASLGIMVVAFLGCG 581
           FN V  + G+ +  L + I  +       + +E    F  I ++++ S+ I V++F GC 
Sbjct: 15  FNFVFAVCGLGILTLGVLIHLQ--ILGVSKQIETGLAFPSITLIVLGSI-IFVISFFGCC 71

Query: 580 SALMENVTLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQPLIRNVIVRLINNPQHDG 401
            A+ E+  +   +    L + +  +  A         D + + +             +  
Sbjct: 72  GAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSE 131

Query: 400 SREILRMVQEGIGCCGADGPMDYINLNKPLPSECRDS------VTGNAYFHGCVDEMTWY 239
           S++ +  +Q+ + CCG     DY   +KP+P+ C +S         N+Y +GCV+ +   
Sbjct: 132 SKDFIDFIQKNLQCCGVHSLSDY--NDKPIPASCCNSPENNTCSISNSYTNGCVEALKDT 189

Query: 238 LEGKTGWLAGIVLASCMVSIINAVMSLVLIQAVKKEE 128
           ++        + +A  +V +I  + +L L  ++K  E
Sbjct: 190 VKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAE 226


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 792 QIYCIKXTLFASTSF--SGXLAY-RYSHYVSGFASSPASMNG 676
           QIY +  +LF   S      +A+ RY+  V G +  P S+NG
Sbjct: 126 QIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 792 QIYCIKXTLFASTSF--SGXLAY-RYSHYVSGFASSPASMNG 676
           QIY +  +LF   S      +A+ RY+  V G +  P S+NG
Sbjct: 92  QIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 792 QIYCIKXTLFASTSF--SGXLAY-RYSHYVSGFASSPASMNG 676
           QIY +  +LF   S      +A+ RY+  V G +  P S+NG
Sbjct: 2   QIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSING 43


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 480 KSSTTHAPISPNTNKANCDPM*PYKSV 560
           K   +  P+ PN   AN   + PY S+
Sbjct: 647 KDGQSPFPLPPNLASANISQLDPYSSL 673


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,181
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)